View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20296_low_32 (Length: 356)

Name: NF20296_low_32
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20296_low_32
NF20296_low_32
[»] chr3 (9 HSPs)
chr3 (13-338)||(52087572-52087881)
chr3 (221-338)||(49466274-49466391)
chr3 (80-146)||(11511300-11511366)
chr3 (80-146)||(55122135-55122201)
chr3 (182-224)||(52088007-52088049)
chr3 (80-144)||(41755056-41755120)
chr3 (83-137)||(11510222-11510276)
chr3 (101-146)||(50122383-50122428)
chr3 (86-146)||(55121581-55121641)
[»] chr6 (3 HSPs)
chr6 (46-148)||(19757887-19757993)
chr6 (101-140)||(5723058-5723097)
chr6 (101-137)||(25987139-25987175)
[»] chr7 (10 HSPs)
chr7 (80-146)||(46088963-46089029)
chr7 (36-137)||(31873857-31873960)
chr7 (80-142)||(46089676-46089738)
chr7 (80-137)||(46741412-46741469)
chr7 (46-137)||(4997298-4997393)
chr7 (46-137)||(19804633-19804727)
chr7 (46-137)||(31873344-31873438)
chr7 (66-146)||(47405451-47405533)
chr7 (46-146)||(35200787-35200891)
chr7 (37-81)||(38858016-38858061)
[»] chr5 (2 HSPs)
chr5 (46-146)||(9070420-9070523)
chr5 (37-146)||(18848039-18848151)
[»] chr2 (6 HSPs)
chr2 (36-144)||(16118977-16119088)
chr2 (48-146)||(16119119-16119220)
chr2 (80-137)||(33667747-33667804)
chr2 (80-137)||(33667877-33667934)
chr2 (64-137)||(43977555-43977631)
chr2 (101-137)||(16340580-16340616)
[»] scaffold0153 (2 HSPs)
scaffold0153 (80-146)||(17390-17456)
scaffold0153 (63-146)||(16854-16939)
[»] chr1 (7 HSPs)
chr1 (46-144)||(10974750-10974851)
chr1 (63-146)||(21263330-21263415)
chr1 (46-145)||(33205427-33205529)
chr1 (36-82)||(46341582-46341629)
chr1 (46-137)||(52427529-52427623)
chr1 (36-92)||(26354554-26354613)
chr1 (90-146)||(32160722-32160778)
[»] chr8 (1 HSPs)
chr8 (80-144)||(3642524-3642589)
[»] chr4 (1 HSPs)
chr4 (80-137)||(40900250-40900307)


Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 52087572 - 52087881
Alignment:
Q  13 aaaatatgactagaaaaggtgcaagaaaattaatgttgacacatttgataggctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaacta 110  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||  |||||||||||||| ||| ||||||||||    
T  52087572 aaaatatgactagaaaaggtgcaagaaaattaacgttgacatatttgataggctgaaaaacatatgtaaaagacgaaaataccccctcgacagttaacta 52087671  T
Q  111 ccgaagtaatgaaccggctgcagttaattgccgaagaacacttaagtgccgaagaacacataannnnnnnngttgaaaatattatggttccatgttacaa 210  Q
    |||||||||||||||||||||||||||                  ||||||||||||||||||        |||||||||||||||||||||||||||||    
T  52087672 ccgaagtaatgaaccggctgcagttaa------------------gtgccgaagaacacataattttttttgttgaaaatattatggttccatgttacaa 52087753  T
Q  211 aagaccaggtacaacgggaaaggctgcaggtgtgcttcgtttggtttcccatgatgctggaacttttgaaattgatgacaatagaggtatacatctagct 310  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52087754 aagaccaggtacagcgggaaaggctgcaggtgtgcttcgtttggttttccatgatgctggaacttttgaaattgatgacaatagaggtatacatctagct 52087853  T
Q  311 caggggattaatttctaaaataagaatg 338  Q
    ||||||||||||||||||||||||||||    
T  52087854 caggggattaatttctaaaataagaatg 52087881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 221 - 338
Target Start/End: Original strand, 49466274 - 49466391
Alignment:
Q  221 acaacgggaaaggctgcaggtgtgcttcgtttggtttcccatgatgctggaacttttgaaattgatgacaatagaggtatacatctagctcaggggatta 320  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  49466274 acaaagggaaaggctgcaggtgtgcttcgtttggttttccatgatgctggaacttttgaaattgatgacaacacaggtatacatctagctcaggggatta 49466373  T
Q  321 atttctaaaataagaatg 338  Q
    ||||||||||||||||||    
T  49466374 atttctaaaataagaatg 49466391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 11511366 - 11511300
Alignment:
Q  80 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 146  Q
    ||||||||||| || | ||| ||||||||||||||| ||||||||||||||||||||| | ||||||    
T  11511366 aagacgaaaatgcctcctcgacagttaactaccgaaataatgaaccggctgcagttaactaccgaag 11511300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 55122201 - 55122135
Alignment:
Q  80 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 146  Q
    ||||||||||| |||| ||| ||||||||||||||| ||||||||||| ||||||||| | ||||||    
T  55122201 aagacgaaaatgccccctcgacagttaactaccgaaataatgaaccggttgcagttaactcccgaag 55122135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 52088049 - 52088007
Alignment:
Q  182 gttgaaaatattatggttccatgttacaaaagaccaggtacaa 224  Q
    |||||||||| ||||||||||||||| ||||||||||||||||    
T  52088049 gttgaaaatactatggttccatgttagaaaagaccaggtacaa 52088007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 41755120 - 41755056
Alignment:
Q  80 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccga 144  Q
    |||||||||||  ||| ||| ||||||||||| ||| |||||||||||||||| |||| ||||||    
T  41755120 aagacgaaaatgtcccctcgacagttaactactgaaataatgaaccggctgcaattaactgccga 41755056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 11510222 - 11510276
Alignment:
Q  83 acgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 137  Q
    ||||||||| ||| ||| | ||||||||||||| ||||||||| |||||||||||    
T  11510222 acgaaaatatcccctcgacggttaactaccgaaataatgaaccagctgcagttaa 11510276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 50122383 - 50122428
Alignment:
Q  101 cagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 146  Q
    ||||||||||||||| | | ||||||||||||||||| ||||||||    
T  50122383 cagttaactaccgaaattaagaaccggctgcagttaactgccgaag 50122428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 55121581 - 55121641
Alignment:
Q  86 aaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 146  Q
    ||||| |||| ||| ||||||||||||||| ||||||||||| ||| ||||| | ||||||    
T  55121581 aaaatgccccctcggcagttaactaccgaaataatgaaccggttgcggttaactaccgaag 55121641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 46 - 148
Target Start/End: Complemental strand, 19757993 - 19757887
Alignment:
Q  46 tgttgacacatttgatagg-ctgaaaaa--catatgtaagacgaaaataccccttcgccagttaactaccgaagt-aatgaaccggctgcagttaattgc 141  Q
    ||||||||||| ||||||| ||||||||  |||||  ||||||||||||| ||| |  ||||||||||||||||| || ||||||||||||||||| |||    
T  19757993 tgttgacacatatgatagggctgaaaaatacatataaaagacgaaaatactcctgcagcagttaactaccgaagttaaagaaccggctgcagttaactgc 19757894  T
Q  142 cgaagaa 148  Q
    |||||||    
T  19757893 cgaagaa 19757887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 140
Target Start/End: Original strand, 5723058 - 5723097
Alignment:
Q  101 cagttaactaccgaagtaatgaaccggctgcagttaattg 140  Q
    |||||||||| |||| ||||||||||||||||||||||||    
T  5723058 cagttaactatcgaaataatgaaccggctgcagttaattg 5723097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 25987139 - 25987175
Alignment:
Q  101 cagttaactaccgaagtaatgaaccggctgcagttaa 137  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  25987139 cagttaactaccgaaataatgaactggctgcagttaa 25987175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 146
Target Start/End: Original strand, 46088963 - 46089029
Alignment:
Q  80 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 146  Q
    ||||| ||||| |||| ||||||||||||||||||| ||||||||||||||||||||| | ||||||    
T  46088963 aagacaaaaatgccccctcgccagttaactaccgaaataatgaaccggctgcagttaactcccgaag 46089029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 137
Target Start/End: Complemental strand, 31873960 - 31873857
Alignment:
Q  36 agaaaattaatgttgacacatttgatagg-ctgaaaa-acatatgtaagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcag 133  Q
    ||||||||  ||||||||||| ||||||| ||||||| |||| |  |||||||||||||| || || |||||||||||||| ||   |||||||||||||    
T  31873960 agaaaattgttgttgacacatatgatagggctgaaaacacatgtaaaagacgaaaatacctctacggcagttaactaccgatgtttggaaccggctgcag 31873861  T
Q  134 ttaa 137  Q
    ||||    
T  31873860 ttaa 31873857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 142
Target Start/End: Complemental strand, 46089738 - 46089676
Alignment:
Q  80 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgcc 142  Q
    ||||||||||| |||| ||| |||||||||||| || || |||||||||||||||||| ||||    
T  46089738 aagacgaaaatgccccctcggcagttaactaccaaaatagtgaaccggctgcagttaactgcc 46089676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 46741469 - 46741412
Alignment:
Q  80 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 137  Q
    |||||||||||  ||||||| || |||||||||||| ||||||| |||||||||||||    
T  46741469 aagacgaaaatgtcccttcgacaattaactaccgaaataatgaatcggctgcagttaa 46741412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 137
Target Start/End: Original strand, 4997298 - 4997393
Alignment:
Q  46 tgttgacacatttgataggct-gaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatg-aaccggctgcagttaa 137  Q
    |||| |||||| ||||||| | |||||||| ||||||  ||||||||||||||| || |||||||||||||||||  || |||||||| |||||||    
T  4997298 tgtttacacatatgatagggttgaaaaacacatgtaaaagacgaaaatacccctacggcagttaactaccgaagttttgaaaccggctacagttaa 4997393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 137
Target Start/End: Complemental strand, 19804727 - 19804633
Alignment:
Q  46 tgttgacacatttgatagg-ctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 137  Q
    ||||||||||| ||||||| |||||||||| ||||||  ||||||||| | | | || || ||||||||||||||   |||||||||||||||||    
T  19804727 tgttgacacatgtgataggactgaaaaacacatgtaaaagacgaaaatgctcatgcgacaattaactaccgaagtttggaaccggctgcagttaa 19804633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 137
Target Start/End: Original strand, 31873344 - 31873438
Alignment:
Q  46 tgttgacacatttgata-ggctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 137  Q
    ||||||||||| ||||| |||||||||||| ||||||  || |||||| | ||| || |||||||||||||||||   |||||| ||||||||||    
T  31873344 tgttgacacatatgataaggctgaaaaacacatgtaaaagatgaaaatgctcctgcggcagttaactaccgaagtttagaaccgactgcagttaa 31873438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 146
Target Start/End: Complemental strand, 47405533 - 47405451
Alignment:
Q  66 tgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 146  Q
    ||||||||| ||||||  |||||||||  ||| ||| ||||||||||| ||| ||| ||||||||||||||||| | ||||||    
T  47405533 tgaaaaacacatgtaaaagacgaaaatgtcccctcggcagttaactactgaaataaagaaccggctgcagttaactaccgaag 47405451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 146
Target Start/End: Complemental strand, 35200891 - 35200787
Alignment:
Q  46 tgttgacacatttgatagg-ctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaa-ccggctgcagttaattgc 141  Q
    |||| |||||| ||||||| |||||||||| ||||||  || |||||| ||||| || |||||| ||||||||||  |||| |||||||||||||| | |    
T  35200891 tgtttacacatatgatagggctgaaaaacacatgtaaaagatgaaaatgcccctgcggcagttagctaccgaagttttgaaaccggctgcagttaactac 35200792  T
Q  142 cgaag 146  Q
    |||||    
T  35200791 cgaag 35200787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 38858061 - 38858016
Alignment:
Q  37 gaaaattaatgttgacacatttgata-ggctgaaaaacatatgtaa 81  Q
    ||||||| |||||||||||||||||| |||||||||||| ||||||    
T  38858061 gaaaattgatgttgacacatttgatagggctgaaaaacacatgtaa 38858016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 146
Target Start/End: Complemental strand, 9070523 - 9070420
Alignment:
Q  46 tgttgacacatttgatagg-ctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgcc 142  Q
    ||||||||||| ||||||| |||||||| | ||||||  ||||||||||  ||| || ||||||||||||||||||| ||||| ||||||||||| | ||    
T  9070523 tgttgacacatatgataggactgaaaaatacatgtaaaagacgaaaatattcctgcggcagttaactaccgaagtaaggaaccagctgcagttaacttcc 9070424  T
Q  143 gaag 146  Q
    ||||    
T  9070423 gaag 9070420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 146
Target Start/End: Complemental strand, 18848151 - 18848039
Alignment:
Q  37 gaaaattaatgttgacacatttgata-ggctgaaaaacatatgt--aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcag 133  Q
    |||||||| ||||||||||| ||||| |||||||||||| ||||  ||||||||||| ||||| |   | ||||||||||||||    ||||| ||||||    
T  18848151 gaaaattattgttgacacatatgatagggctgaaaaacacatgtaaaagacgaaaatgcccctgcagtaattaactaccgaagtttaaaaccgactgcag 18848052  T
Q  134 ttaattgccgaag 146  Q
    |||| | ||||||    
T  18848051 ttaactaccgaag 18848039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 144
Target Start/End: Original strand, 16118977 - 16119088
Alignment:
Q  36 agaaaattaatgttgacacatttgatagg-ctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgca 132  Q
    ||||||||  ||||||||||| ||||||| |||||||||| ||||||  ||||||||| ||||| |  | |||||||||||||||||  ||||| |||||    
T  16118977 agaaaattgctgttgacacatatgatagggctgaaaaacacatgtaaatgacgaaaatgcccctgcaacggttaactaccgaagtaagaaaccgactgca 16119076  T
Q  133 gttaattgccga 144  Q
    ||||| ||||||    
T  16119077 gttaactgccga 16119088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 146
Target Start/End: Complemental strand, 16119220 - 16119119
Alignment:
Q  48 ttgacacatttgatag-gctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccga 144  Q
    ||||||||| |||||| ||| ||||||||||||||  ||||||||| ||| |    ||||| ||||||||||||| ||||||||||||||||| ||| ||    
T  16119220 ttgacacatatgatagagctaaaaaacatatgtaaaagacgaaaatgcccatgtagcagtttactaccgaagtaaagaaccggctgcagttaactgctga 16119121  T
Q  145 ag 146  Q
    ||    
T  16119120 ag 16119119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 33667747 - 33667804
Alignment:
Q  80 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 137  Q
    |||| ||||||  ||| ||| ||||||||||||||| |||||||||||||||||||||    
T  33667747 aagatgaaaatctcccctcggcagttaactaccgaaataatgaaccggctgcagttaa 33667804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 33667934 - 33667877
Alignment:
Q  80 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 137  Q
    ||||||||||| || | ||  ||||||||||||||| |||||||||||||||||||||    
T  33667934 aagacgaaaatgcctcctcagcagttaactaccgaaataatgaaccggctgcagttaa 33667877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 43977555 - 43977631
Alignment:
Q  64 gctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatg-aaccggctgcagttaa 137  Q
    ||||||||||| ||||||  ||||||||| ||||| || ||| |||||||||||||  || ||||||||||||||||    
T  43977555 gctgaaaaacacatgtaaaagacgaaaatgcccctgcggcagctaactaccgaagttttgaaaccggctgcagttaa 43977631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 16340616 - 16340580
Alignment:
Q  101 cagttaactaccgaagtaatgaaccggctgcagttaa 137  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  16340616 cagttaactaccgaagtaaggaaccggttgcagttaa 16340580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 17456 - 17390
Alignment:
Q  80 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 146  Q
    |||||||||||  ||| ||| ||||||||||||||| ||||||||||||||||||||| | ||||||    
T  17456 aagacgaaaatgacccctcggcagttaactaccgaaataatgaaccggctgcagttaactaccgaag 17390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 16854 - 16939
Alignment:
Q  63 ggctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 146  Q
    |||||||||||| ||||||  ||||||||| ||||| ||  ||||||||||||||||   ||||||| ||||||||| | ||||||    
T  16854 ggctgaaaaacacatgtaaaagacgaaaatgcccctgcggtagttaactaccgaagtttggaaccggttgcagttaactaccgaag 16939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 10974851 - 10974750
Alignment:
Q  46 tgttgacacatttgatagg-ctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgcc 142  Q
    ||||||||||| ||||||| |||||||||| || |||  ||||||||| || || || ||||||||||| ||||||| ||||||| ||||||||| ||||    
T  10974851 tgttgacacatatgatagggctgaaaaacacatataaaagacgaaaatgcctctgcgacagttaactactgaagtaaggaaccggttgcagttaactgcc 10974752  T
Q  143 ga 144  Q
    ||    
T  10974751 ga 10974750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 21263330 - 21263415
Alignment:
Q  63 ggctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 146  Q
    |||||||||||| ||||||  || |||||||||||| || |||||||||||||||||   |||||| |||||||||||| ||||||    
T  21263330 ggctgaaaaacacatgtaaaagatgaaaatacccctgcggcagttaactaccgaagtttggaaccgactgcagttaattcccgaag 21263415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 145
Target Start/End: Original strand, 33205427 - 33205529
Alignment:
Q  46 tgttgacacatttgatagg-ctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgcc 142  Q
    |||| |||||| ||||||| |||||||||| ||||||  ||||||||| || || || |||||| ||||||||||   |||||||||| |||||| ||||    
T  33205427 tgtttacacatatgatagggctgaaaaacacatgtaaaagacgaaaatgcctctgcggcagttacctaccgaagtttggaaccggctgtagttaactgcc 33205526  T
Q  143 gaa 145  Q
    |||    
T  33205527 gaa 33205529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 46341582 - 46341629
Alignment:
Q  36 agaaaattaatgttgacacatttgata-ggctgaaaaacatatgtaag 82  Q
    |||||||| |||||||||||||||||| ||||||||||| ||||||||    
T  46341582 agaaaattgatgttgacacatttgatagggctgaaaaacgtatgtaag 46341629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 137
Target Start/End: Complemental strand, 52427623 - 52427529
Alignment:
Q  46 tgttgacacatttgatagg-ctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 137  Q
    |||||||| || ||||||| |||||||||| ||||||  ||||||||| || || |  |||||||||||||||||   |||||||||||||||||    
T  52427623 tgttgacatatatgataggactgaaaaacacatgtaaaagacgaaaatgcctctgctacagttaactaccgaagtttggaaccggctgcagttaa 52427529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 26354613 - 26354554
Alignment:
Q  36 agaaaattaatgttgacacatttgatagg-ctgaaaaacatatgt--aagacgaaaatac 92  Q
    |||||||| |||||||| ||| ||||||| |||||||||||||||  |||||||||||||    
T  26354613 agaaaattgatgttgactcatatgatagggctgaaaaacatatgtaaaagacgaaaatac 26354554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 32160722 - 32160778
Alignment:
Q  90 taccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 146  Q
    ||||||| || |||||||||||||||||   ||||||||||||||||| | ||||||    
T  32160722 tacccctgcggcagttaactaccgaagtttggaaccggctgcagttaacttccgaag 32160778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 3642589 - 3642524
Alignment:
Q  80 aagacgaaaataccccttcgccagttaactaccgaag-taatgaaccggctgcagttaattgccga 144  Q
    ||||||||||||||| | || |||||||||| ||||| ||| ||||||| ||||||||| ||||||    
T  3642589 aagacgaaaatacccatgcggcagttaactatcgaagttaaagaaccggttgcagttaactgccga 3642524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 40900250 - 40900307
Alignment:
Q  80 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 137  Q
    ||||||||||| |||| ||| |||||||||| |||| |||| |||||||| |||||||    
T  40900250 aagacgaaaatgccccatcggcagttaactatcgaaataataaaccggctacagttaa 40900307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University