View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_low_34 (Length: 341)
Name: NF20296_low_34
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 114; Significance: 9e-58; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 19582048 - 19582169
Alignment:
| Q |
17 |
ataccatggtcattagaagcatatatcacttaacccaaaaataaggtttcaagtatcaccctaatttgaaccagaaatgcattattattattataaaaga |
116 |
Q |
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| T |
19582048 |
ataccatggtcattagaagcatatatcacttaacccaaaaataaggtttcaagtataaccctaatttgaaccagaaatgcattattattattataaaaga |
19582147 |
T |
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| Q |
117 |
aaacctacaaagttactcaaga |
138 |
Q |
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| T |
19582148 |
aaacctacaaagtcactcaaga |
19582169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 19591537 - 19591416
Alignment:
| Q |
17 |
ataccatggtcattagaagcatatatcacttaacccaaaaataaggtttcaagtatcaccctaatttgaaccagaaatgcattattattattataaaaga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19591537 |
ataccatggtcattagaagcatatatcacttaacccaaaaataaggtttcaagtataaccctaatttgaaccagaaatgcattattattattataaaaga |
19591438 |
T |
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| Q |
117 |
aaacctacaaagttactcaaga |
138 |
Q |
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| T |
19591437 |
aaacctacaaagtcactcaaga |
19591416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 194 - 326
Target Start/End: Complemental strand, 19587188 - 19587054
Alignment:
| Q |
194 |
attgcatattagtactttaattaaaatagtatata--ctaatgaatgaaacactgcatgagttaatattctttgtaaccattttcatcccaataatgtaa |
291 |
Q |
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| T |
19587188 |
attgcatatgagtactttaattaaaatagtatatatactaattaatgaaacactgcatgagttaatattctttgtaaccaatttgatcccaataatgtaa |
19587089 |
T |
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| Q |
292 |
atttcaagaactcatgcatggagattaattaaact |
326 |
Q |
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| T |
19587088 |
atttcaagaactcatgcatggagattaattaaact |
19587054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 19587424 - 19587241
Alignment:
| Q |
17 |
ataccatggtcattagaagcatatatcacttaaccca---------------aaaataaggtttcaagtatcaccctaatttgaaccagaaatgc---at |
98 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| || || |
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| T |
19587424 |
ataccatggtcattagaagcatatatcacttaacccaaaaaaggagtagacaaaaataaggtttcaagtatcaccctaatttgaaccaaaaaagcattat |
19587325 |
T |
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| Q |
99 |
tattattattataaaagaaaacctacaaagttactcaagattaattctcttgctaagtaatactccaaagttcaacctgcaaaa |
182 |
Q |
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| T |
19587324 |
tattattattataaaagaaaacctacaaagttactcaagattaattctcttgctaagtaatactccaaagtccaaattgcaaaa |
19587241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 209 - 326
Target Start/End: Original strand, 19582257 - 19582379
Alignment:
| Q |
209 |
tttaattaaaatagtatatactaatgaatgaaacactgcat---gagttaatattctttgtaaccattttcatcccaataatgtaaatttcaagaact-- |
303 |
Q |
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|||||||||||||| ||| |||||||||||||||||| || ||||||||||||||||| |||| ||| |||||||||| ||||||||||| |||| |
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| T |
19582257 |
tttaattaaaatagcata--ctaatgaatgaaacactgaataatgagttaatattctttgttaccaatttgatcccaataacgtaaatttcaataactca |
19582354 |
T |
|
| Q |
304 |
--catgcatggagattaattaaact |
326 |
Q |
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||||||||||||||||||||||| |
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| T |
19582355 |
tgcatgcatggagattaattaaact |
19582379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 209 - 326
Target Start/End: Complemental strand, 19591328 - 19591206
Alignment:
| Q |
209 |
tttaattaaaatagtatatactaatgaatgaaacactgcat---gagttaatattctttgtaaccattttcatcccaataatgtaaatttcaagaactca |
305 |
Q |
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|||||||||||||| ||| |||||||||||||||||| || ||||||||||||||||| |||| ||| |||||||||| ||||||||||| |||||| |
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| T |
19591328 |
tttaattaaaatagcata--ctaatgaatgaaacactgaataatgagttaatattctttgttaccaatttgatcccaataacgtaaatttcaataactca |
19591231 |
T |
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| Q |
306 |
tg----catggagattaattaaact |
326 |
Q |
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|| ||||||||||||||||||| |
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| T |
19591230 |
tgcatgcatggagattaattaaact |
19591206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 227 - 295
Target Start/End: Complemental strand, 20789423 - 20789355
Alignment:
| Q |
227 |
tactaatgaatgaaacactgcatgagttaatattctttgtaaccattttcatcccaataatgtaaattt |
295 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||| |
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| T |
20789423 |
tactaataaatgaaacactgcatgagttaatattctttgtaaccaatttgatcccaataacgtaaattt |
20789355 |
T |
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