View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_low_35 (Length: 339)
Name: NF20296_low_35
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 38820208 - 38819900
Alignment:
| Q |
1 |
ttatttatcaaagaagaataatatgctaaccaagatccatgcctaattgccttttgttggtgcttggtataaaaatctacctctt-ttaacatgtatgcg |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38820208 |
ttatttatcaaagaagaataatatgctaaccaagatccatgcctaattgccttttgttggtgcttggtataaaaatctacctcttgttaacatgtatgcg |
38820109 |
T |
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| Q |
100 |
cattcatgtgacaaacaattggatattcagctataacannnnnnnnnnnnacgtaggggatgaatttactctataaggaatttactttcaggagttatat |
199 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
38820108 |
cattcatgtgacaaacaattggatattcggctataacattttttgtttttacgtagggaatgaatttactctataaggaatttactttcgggagttatat |
38820009 |
T |
|
| Q |
200 |
ataaacgagggtgtgaggttcgtggtggtgacagttagttttttattcgtgtgcccttaaacctttggaaaaaatatttgtattaaatatatttcagaag |
299 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38820008 |
ttaaacgagggtgtgaggtccgtggtggtgacagttagttttttattcgtgtgcccttaaacctttggaaaaaatatttgtattaaatatatttcagaat |
38819909 |
T |
|
| Q |
300 |
aatgtttaa |
308 |
Q |
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||||||||| |
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| T |
38819908 |
aatgtttaa |
38819900 |
T |
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