View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_low_36 (Length: 328)
Name: NF20296_low_36
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 7535036 - 7535345
Alignment:
| Q |
1 |
tccaatactctattgtctgtgctaaccgtaagaggatgcaaatgttgcaaagcatgtctgtgtacaactcttgcctcttcaagagacttagtcttcccac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7535036 |
tccaatactctattgtctgtgctaaccgtaagaggatgcaaatgttgcaaagcatgtctgtgtacaactcttgcctcttcaagagacttagtcttcccac |
7535135 |
T |
|
| Q |
101 |
aaacgtgcattaattgcaaacaacgctgcaaatccatatgaatataaagcttttccaacacttgcaaaatgtcaaccgattcattcactttaccatccct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7535136 |
aaacgtgcattaattgcaaacaacgctgcaaatccatatgaatataaagcttttccaacacttgcaaaatgtcaaccgcttcattcactttaccatccct |
7535235 |
T |
|
| Q |
201 |
gcaaaaactatctagtacttctacgagtgtgcctttgtacgaactatttgaactagcatgtttatatcgataagatccactagcccttcggttatacaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7535236 |
gcaaaaactatctagtacttctacgagtgtgcctttgtactaactatttgaactagcatgtttatatcgataagatccactagcccttcggttatacaac |
7535335 |
T |
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| Q |
301 |
ccagcacgat |
310 |
Q |
| |
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|||||||||| |
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| T |
7535336 |
ccagcacgat |
7535345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 7449498 - 7449796
Alignment:
| Q |
1 |
tccaatactctattgtctgtgctaaccgtaagaggatgcaaatgttgcaaagcatgtctgtgtacaactcttgcctcttcaagagacttagtcttcccac |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
7449498 |
tccaatactctattgtctgtgctaaccgtaagaggatgcaaatgttgcaaagcatgtctgtgtacaactcttgcctcctcaagagacttagccttcccac |
7449597 |
T |
|
| Q |
101 |
aaacgtgcattaattgcaaacaacgctgcaaatccatatgaatataaagcttttccaacacttgcaaaatgtcaaccgattcattcactttaccatccct |
200 |
Q |
| |
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||| | |||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||| | ||||| | ||| ||||||||||||||||| |
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| T |
7449598 |
aaatgcgcattaattgcaaacaacgctgcaaatccacatgaatatgaagcttttccaacttttgcaaattttcaactgcttccttcactttaccatccct |
7449697 |
T |
|
| Q |
201 |
gcaaaaactatctagtacttctacgagtgtgcctttgtacgaactatttgaactagcatgtttatatcgataagatccactagcccttcggttatacaac |
300 |
Q |
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||||||||||||||| ||| | |||||||| || ||| ||||| |||||||||| |||||| |||||||||||||| ||| | ||||||||||| |
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| T |
7449698 |
gcaaaaactatctag---ttcctcaagtgtgccgttatacaaactacctgaactagcaagtttatcccgataagatccactttcccataggttatacaac |
7449794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 39 - 212
Target Start/End: Original strand, 18664525 - 18664698
Alignment:
| Q |
39 |
caaatgttgcaaagcatgtctgtgtacaactcttgcctcttcaagagacttagtcttcccacaaacgtgcattaattgcaaacaacgctgcaaatccata |
138 |
Q |
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||||||||| ||| ||| ||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||| |||||||||| | |||||| | | |
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| T |
18664525 |
caaatgttgtaaaacatatctgtgtacaacttttgcctcttcaagagacttggtcttcccacattgttgcattaatcgcaaacaacgatccaaatctaca |
18664624 |
T |
|
| Q |
139 |
tgaatataaagcttttccaacacttgcaaaatgtcaaccgattcattcactttaccatccctgcaaaaactatc |
212 |
Q |
| |
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|||||| || |||||| ||||||||||||| |||| | ||| ||||||| ||| ||| ||||| ||||||| |
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| T |
18664625 |
agaatatgaaacttttctaacacttgcaaaacatcaattgcttccttcacttcaccctccatgcaagaactatc |
18664698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 169
Target Start/End: Original strand, 18664825 - 18664955
Alignment:
| Q |
39 |
caaatgttgcaaagcatgtctgtgtacaactcttgcctcttcaagagacttagtcttcccacaaacgtgcattaattgcaaacaacgctgcaaatccata |
138 |
Q |
| |
|
||||||||| ||| ||| | ||||||||||| |||||||||||||| ||| || ||| ||||| | ||||||||| |||||||| | | |||||||| | |
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| T |
18664825 |
caaatgttgtaaaacatatatgtgtacaacttttgcctcttcaagaaactcagcctttccacacagttgcattaatcgcaaacaaagatacaaatccaca |
18664924 |
T |
|
| Q |
139 |
tgaatataaagcttttccaacacttgcaaaa |
169 |
Q |
| |
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| | ||| ||||||||| ||| ||||||||| |
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| T |
18664925 |
taagtatgaagcttttctaactcttgcaaaa |
18664955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 39 - 212
Target Start/End: Complemental strand, 15079303 - 15079130
Alignment:
| Q |
39 |
caaatgttgcaaagcatgtctgtgtacaactcttgcctcttcaagagacttagtcttcccacaaacgtgcattaattgcaaacaacgctgcaaatccata |
138 |
Q |
| |
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||||||||| ||| ||| ||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||| ||||||||| | |||||| | | |
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| T |
15079303 |
caaatgttgtaaaacatatctgtgtacaacttttgcctcttcaagagacttggtcttcccacattgttgcattaatctcaaacaacgatccaaatctaca |
15079204 |
T |
|
| Q |
139 |
tgaatataaagcttttccaacacttgcaaaatgtcaaccgattcattcactttaccatccctgcaaaaactatc |
212 |
Q |
| |
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||||||| || |||||| ||||||||||||| |||| | ||| ||||||| ||| ||| ||||| ||||||| |
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| T |
15079203 |
tgaatatgaaacttttctaacacttgcaaaacatcaattgcttccttcacttcaccctccatgcaagaactatc |
15079130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 39 - 169
Target Start/End: Complemental strand, 15079003 - 15078873
Alignment:
| Q |
39 |
caaatgttgcaaagcatgtctgtgtacaactcttgcctcttcaagagacttagtcttcccacaaacgtgcattaattgcaaacaacgctgcaaatccata |
138 |
Q |
| |
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||||||||| ||| ||| ||||||||||||| |||||||||||||| ||| || ||| ||||| | ||||||||| |||||||| | | |||||||| | |
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| T |
15079003 |
caaatgttgtaaaacatatctgtgtacaacttttgcctcttcaagaaactcagcctttccacacagttgcattaatcgcaaacaaagatacaaatccaca |
15078904 |
T |
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| Q |
139 |
tgaatataaagcttttccaacacttgcaaaa |
169 |
Q |
| |
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| | ||| ||||||||| ||| ||||||||| |
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| T |
15078903 |
taagtatgaagcttttctaactcttgcaaaa |
15078873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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