View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_low_38 (Length: 317)
Name: NF20296_low_38
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 26 - 310
Target Start/End: Original strand, 47652656 - 47652940
Alignment:
| Q |
26 |
atatagtaagggaaagtggggaaagagtacaggttggcaaccatgtgaaaaagtttgttaagagaatggggaaagaatagagaaagattcagagtagtag |
125 |
Q |
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| T |
47652656 |
atatagtaagggaaagtggggaaagagtacaggttggcaaccatgtgaaaaagtttgttaagagaatggggaaagaatagagaaagattcagagtagtag |
47652755 |
T |
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| Q |
126 |
ctactgtacatgtctctctgattgtgatgtattgtaatattggtgtttgcatgtccgtgatgggataaagactttataaagttttcttagtttttgtaat |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47652756 |
ctactgtacatgtctctctgattgtgatgtattgtaatattggtgtttgcatgtccgtgatgggataaagactttataaagttttcttagtttttgtaat |
47652855 |
T |
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| Q |
226 |
tttgtatatccgtgaatgaactttccttcctttgatgtgatatcatatctcttattttcctttctttcaccacccaatttctgtg |
310 |
Q |
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| T |
47652856 |
tttgtatatccgtgaatgaactttccttcctttgatgtgatatcatatctcttattttcctttctttcaccacccaatttctgtg |
47652940 |
T |
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