View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20296_low_40 (Length: 306)
Name: NF20296_low_40
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_low_40 |
 | |
|
| [»] chr8 (23 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
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|
Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 23)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 19339654 - 19339959
Alignment:
| Q |
1 |
gaaggaatttgttcaacaaagtctgatgtttatagctttggagtgttgcttcttgaaattgtttgtggaagaaaaaacaatagcttccatgatgttgatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19339654 |
gaaggaatttgttcaacaaagtctgatgtttatagctttggagtgttgcttcttgaaattatttgtggaagaaaaaacaatagcttccatgatgttgatc |
19339753 |
T |
|
| Q |
101 |
gcccactaaacctaataggacatgtatgtaaatttactcacattgacttttatttttaaaatatatcattccttgttcctaatttgattaaactcctaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19339754 |
gcccactaaacctaataggacatgtatgtaaatttactcacattgacttttatttttaaaatatatcattccttgttcctaatttgattaaactcctaac |
19339853 |
T |
|
| Q |
201 |
aggcatgggagctatggaatgatggtgagtatctacagttactggatccatctttatgtgacacatttgttcctgatgaagtgcaaaggtgcattcacgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
19339854 |
aggcatgggagctatggaatgatggtgagtatctacagttactggatccatctttatgtgacacatttgttcctgatgaagtgcaaaggtgcattcatgt |
19339953 |
T |
|
| Q |
301 |
tggtct |
306 |
Q |
| |
|
|||||| |
|
|
| T |
19339954 |
tggtct |
19339959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 19357675 - 19357982
Alignment:
| Q |
1 |
gaaggaatttgttcaacaaagtctgatgtttatagctttggagtgttgcttcttgaaattgtttgtggaagaaaaaacaatagcttccatgatgttgatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19357675 |
gaaggaatttgttcaacaaagtctgatgtttatagctttggagtgttgcttcttgaaattgtttgtggaagaaaaaacaatagcttccatgatgttgatc |
19357774 |
T |
|
| Q |
101 |
gcccactaaacctaataggacatgtatgtaaatttactcacattgacttttatttttaaaatatatcat---tccttgttcctaatttgattaaactcct |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
19357775 |
gcccactaaacctaataggacatgtatgtaaatttactcccattgac-tttattttaaaaatatagaattcctccttgttcctaatttgattaaactcct |
19357873 |
T |
|
| Q |
198 |
aacaggcatgggagctatggaatgatggtgagtatctacagttactggatccatctttatgtgacacatttgttcctgatgaagtgcaaaggtgcattca |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
19357874 |
aacaggcatgggagctatggaatgatggtgagtatctacagttactggatccatctttatgtgacacatttgttcctgatgaagtgaaaaggtgcattca |
19357973 |
T |
|
| Q |
298 |
cgttggtct |
306 |
Q |
| |
|
||||||||| |
|
|
| T |
19357974 |
cgttggtct |
19357982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 19257866 - 19258173
Alignment:
| Q |
1 |
gaaggaatttgttcaacaaagtctgatgtttatagctttggagtgttgcttcttgaaattgtttgtggaagaaaaaacaatagcttccatgatgttgatc |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||| || |||||||||||| |||| |||||||| |||| || |||| ||||| |||||| |
|
|
| T |
19257866 |
gaaggaatctgttcaacaaagtctgatgtttatagctttgaagtttttcttcttgaaattatttgcggaagaaagaacagtaacttctatgatcttgatc |
19257965 |
T |
|
| Q |
101 |
gcccactaaacctaataggacatgtatgtaaattt---actcacattgacttttatttttaaaatatatcattccttgttcctaatttgattaaactcct |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| || || | ||||||||| |||||||| ||| ||||||||| ||| ||||||||||||| |||||| |
|
|
| T |
19257966 |
gcccactaaacctaataggacatgtatgttaaattatcagtcacattga-atttattttaaaattatatcatttcttattcctaatttgatgaaactctg |
19258064 |
T |
|
| Q |
198 |
aacaggcatgggagctatggaatgatggtgagtatctacagttactggatccatctttatgtgacacatttgttcctgatgaagtgcaaaggtgcattca |
297 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||| ||| |||| ||| |||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
19258065 |
aacaggcttgggagctatggaatgatggtgagtatctacggttactagatacatcattaagtgatacatttgttcctgaagaagtgcaaaggtgcattca |
19258164 |
T |
|
| Q |
298 |
cgttggtct |
306 |
Q |
| |
|
|||||||| |
|
|
| T |
19258165 |
tgttggtct |
19258173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 19537269 - 19536967
Alignment:
| Q |
1 |
gaaggaatttgttcaacaaagtctgatgtttatagctttggagtgttgcttcttgaaattgtttgtggaagaaaaaacaatagcttccatgatgttgatc |
100 |
Q |
| |
|
|||||| ||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||| ||||| |
|
|
| T |
19537269 |
gaaggagtttgttctacaaagtctgatgtctatagctttggagtgttgctgcttgaaattgtttgtggaagaaaaaataatagcttctatgatgatgatc |
19537170 |
T |
|
| Q |
101 |
gcccactaaacctaataggacatgtatgtaaatttactcacattgacttttatttttaaaatatatcattccttgttcctaatttgattaaactcctaac |
200 |
Q |
| |
|
| |||||||| ||||| |||||||||||| |||| ||| |||||| |||| |||||| | |||| | | |||||| |||||| |||| | | ||| |
|
|
| T |
19537169 |
gtccactaaatctaatcggacatgtatgtcaatt-actttcattgagtttt--ttttaataaatattaaccgttgttcataatttaattatattattaat |
19537073 |
T |
|
| Q |
201 |
aggcatgggagctatggaatgatggtgagtatctacagttactggatccatctttatgtgacacatttgttcctgatgaagtgcaaaggtgcattcacgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
19537072 |
aggcatgggagctatggaatgatggtgagcatctacagttactggatccatctttaagtgacacatttgttccttatgaagtgcaaaggtgcattcatgt |
19536973 |
T |
|
| Q |
301 |
tggtct |
306 |
Q |
| |
|
|||||| |
|
|
| T |
19536972 |
tggtct |
19536967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 19454699 - 19455003
Alignment:
| Q |
1 |
gaaggaatttgttcaacaaagtctgatgtttatagctttggagtgttgcttcttgaaattgtttgtggaagaaaaaacaatagcttccatgatgttgatc |
100 |
Q |
| |
|
|||||| ||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||| ||||| |
|
|
| T |
19454699 |
gaaggagtttgttctacaaagtctgatgtctatagctttggagtgttgctgcttgaaattgtttgtggaagaaaaaataatagcttttatgatgatgatc |
19454798 |
T |
|
| Q |
101 |
gcccactaaacctaataggacatgtatgtaaatttactcacattgacttttatttttaaaatatatcattccttgttcctaatttgattaaactcctaac |
200 |
Q |
| |
|
| |||||||| ||||| |||||||||||| || ||||| |||||| |||| |||| | | |||| |||| || ||||||||||||| || | ||| |
|
|
| T |
19454799 |
gtccactaaatctaatcggacatgtatgtcaa-ttactttcattgagtttttttttaattaaatattattcgttcctcctaatttgattcaattattaat |
19454897 |
T |
|
| Q |
201 |
aggcatgggagctatggaatgatggtgagtatctacagttactggatccatctttatgtgacacatttgttcctgatgaagtgcaaaggtgcattcacgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || || |||||||||||||| |||||||||||||||| ||||||||| ||||||||||||| || |
|
|
| T |
19454898 |
aggcatgggagctatggaatgatggtgagtatctaaagctaatggatccatctttaagtgacacatttgttccggatgaagtgaaaaggtgcattcatgt |
19454997 |
T |
|
| Q |
301 |
tggtct |
306 |
Q |
| |
|
|||||| |
|
|
| T |
19454998 |
tggtct |
19455003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 19348642 - 19348944
Alignment:
| Q |
1 |
gaaggaatttgttcaacaaagtctgatgtttatagctttggagtgttgcttcttgaaattgtttgtggaagaaaaaacaatagcttccatgatgttgatc |
100 |
Q |
| |
|
|||||| ||||||| ||||||||||| || |||||||||||||||||||| |||||||| |||||||| |||||||||||||||||| |||| ||||||| |
|
|
| T |
19348642 |
gaaggagtttgttctacaaagtctgacgtctatagctttggagtgttgctacttgaaatcgtttgtgggagaaaaaacaatagcttctatgacgttgatc |
19348741 |
T |
|
| Q |
101 |
gcccactaaacctaataggacatgtatgtaaatttactcacattgacttttatttttaaaatatatcattccttgttcctaatttgattaaactcctaac |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||| | || ||| ||| || |||| ||| |||||| ||| |||||||||||||||||||| | ||| |
|
|
| T |
19348742 |
gcccactaaatctaataggacatgtatgtcagtt-actttcatcgagttttttttaataaatattacatg--ttgttcctaatttgattaaattattaat |
19348838 |
T |
|
| Q |
201 |
aggcatgggagctatggaatgatggtgagtatctacagttactggatccatctttatgtgacacatttgttcctgatgaagtgcaaaggtgcattcacgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| ||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
19348839 |
aggcatgggagctatggaatgatggtgagtatctacagttaatggatccaacattaaatgacacatttgttcctgatgaagtgaaaaggtgcattcatgt |
19348938 |
T |
|
| Q |
301 |
tggtct |
306 |
Q |
| |
|
|||||| |
|
|
| T |
19348939 |
tggtct |
19348944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 19399401 - 19399703
Alignment:
| Q |
1 |
gaaggaatttgttcaacaaagtctgatgtttatagctttggagtgttgcttcttgaaattgtttgtggaagaaaaaacaatagcttccatgatgttgatc |
100 |
Q |
| |
|
|||||| ||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||| ||||| |
|
|
| T |
19399401 |
gaaggagtttgttctccaaagtctgatgtctatagctttggagtgttgctgcttgaaattgtttgtggaagaaaaaataatagcttttatgatgctgatc |
19399500 |
T |
|
| Q |
101 |
gcccactaaacctaataggacatgtatgtaaatttactcacattgacttttatttttaaaatatatcattccttgttcctaatttgattaaactcctaac |
200 |
Q |
| |
|
|||||||||| ||||| |||||||||||| || ||||| |||||| ||| ||||||| | |||| | | || ||| |||||| |||| | | ||| |
|
|
| T |
19399501 |
gcccactaaatctaatcggacatgtatgtcaa-ttactttcattgagttt--tttttaataaatattacccgttcttcataatttaattatattattaat |
19399597 |
T |
|
| Q |
201 |
aggcatgggagctatggaatgatggtgagtatctacagttactggatccatctttatgtgacacatttgttcctgatgaagtgcaaaggtgcattcacgt |
300 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
19399598 |
aggcatgggagatatggaatgatggtgagtatctacggttactggatccatctttaagtgacacatttgttcctgatgaagtacaaaggtgtattcacgt |
19399697 |
T |
|
| Q |
301 |
tggtct |
306 |
Q |
| |
|
|||||| |
|
|
| T |
19399698 |
tggtct |
19399703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 19274609 - 19274306
Alignment:
| Q |
1 |
gaaggaatttgttcaacaaagtctgatgtttatagctttggagtgttgcttcttgaaattgtttgtggaagaaaaaacaatagcttccatgatgttgatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
19274609 |
gaaggaatttgttcaacaaagtctgatgtttatagctttggagtgttgcttcttgaaattatttgtggaagaaaaaacaatagcttttatgatgttggtc |
19274510 |
T |
|
| Q |
101 |
gcccactaaacctaataggacatgtatgtaaatttactcacattgacttttatttttaaaatatatcattccttgttcctaatttgattaaactcctaac |
200 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| || ||||| ||| || |||| || |||||| ||||||| ||||||||| |||| |||||| ||| |
|
|
| T |
19274509 |
gcccact-aacctaataggacatgtatttaaaattcgtcacagtga-gttaatttaaaatatatattattccttcttcctaattggatttaactcccaac |
19274412 |
T |
|
| Q |
201 |
aggcatgggagctatggaatgatggtgagtatctacagttactggatccatctttatgtgacacatttgttcctgatgaagtgcaaaggtgcattcacgt |
300 |
Q |
| |
|
| |||||||| |||| ||||||||||| ||| |||| ||| |||||||||| |||| ||||||| ||||||| | |||||||||| |||||||| || |
|
|
| T |
19274411 |
attcatgggaggtatgaaatgatggtgattatgtacaattaatggatccatcattatttgacacacttgttcccaaacaagtgcaaagttgcattcatgt |
19274312 |
T |
|
| Q |
301 |
tggtct |
306 |
Q |
| |
|
|||||| |
|
|
| T |
19274311 |
tggtct |
19274306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 19500360 - 19500056
Alignment:
| Q |
1 |
gaaggaatttgttcaacaaagtctgatgtttatagctttggagtgttgcttcttgaaattgtttgtggaagaaaaaacaatagcttccatgatgttgatc |
100 |
Q |
| |
|
|||||||| ||||||||||||||||| || ||||| |||||||||||||| ||||||||| ||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
19500360 |
gaaggaatatgttcaacaaagtctgacgtctatagttttggagtgttgctacttgaaattatttgtgggagaaaaaacaatagcttttatgatgttgatc |
19500261 |
T |
|
| Q |
101 |
gcccactaaacctaataggacatgtatgtaaatttactcacattgacttttatttttaaaatatatcattccttgttcctaatttgattaaactcctaac |
200 |
Q |
| |
|
| |||||||| |||||||||||||||||| |||| || | |||| |||| ||||||| | |||| |||| || ||||||||||||| || | ||| |
|
|
| T |
19500260 |
gtccactaaatctaataggacatgtatgtcaattcgttc-cgttgagttttttttttaataaatattattcgttcctcctaatttgattcaattattaat |
19500162 |
T |
|
| Q |
201 |
aggcatgggagctatggaatgatggtgagtatctacagttactggatccatctttatgtgacacatttgttcctgatgaagtgcaaaggtgcattcacgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || || |||||||| | ||| ||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
19500161 |
aggcatgggagctatggaatgatggtgagtatctaaagctaatggatccaacattaaatgacacatttgttcctgatgaagtgaaaaggtgcattcatgt |
19500062 |
T |
|
| Q |
301 |
tggtct |
306 |
Q |
| |
|
|||||| |
|
|
| T |
19500061 |
tggtct |
19500056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 19480419 - 19480118
Alignment:
| Q |
1 |
gaaggaatttgttcaacaaagtctgatgtttatagctttggagtgttgcttcttgaaattgtttgtggaagaaaaaacaatagcttccatgatgttgatc |
100 |
Q |
| |
|
|||||| ||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
19480419 |
gaaggagtttgttctacaaaatctgatgtctatagctttggagtgttgctgcttgaaattgtttgtggaagaaaaaacaatagcttttatgatggtgatc |
19480320 |
T |
|
| Q |
101 |
gcccactaaacctaataggacatgtatgtaaatttactcacattgacttttatttttaaaatatatcattccttgttcctaatttgattaaactcctaac |
200 |
Q |
| |
|
| |||||||| ||||| |||||||||||| || ||||| |||||| || ||||||| | |||| | || ||| ||||||||||| | | ||| |
|
|
| T |
19480319 |
gtccactaaatctaatcggacatgtatgttaa-ttactttcattgagtt---tttttaataaatattacctattcttcgtaatttgattagattattaat |
19480224 |
T |
|
| Q |
201 |
aggcatgggagctatggaatgatggtgagtatctacagttactggatccatctttatgtgacacatttgttcctgatgaagtgcaaaggtgcattcacgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || || |||||||| | ||| ||||||||||||||| ||||||||| ||||||||||||| || |
|
|
| T |
19480223 |
aggcatgggagctatggaatgatggtgagtatctaaagctaatggatccaacgttaaatgacacatttgttccggatgaagtgaaaaggtgcattcatgt |
19480124 |
T |
|
| Q |
301 |
tggtct |
306 |
Q |
| |
|
|||||| |
|
|
| T |
19480123 |
tggtct |
19480118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 19526375 - 19526074
Alignment:
| Q |
1 |
gaaggaatttgttcaacaaagtctgatgtttatagctttggagtgttgcttcttgaaattgtttgtggaagaaaaaacaatagcttccatgatgttgatc |
100 |
Q |
| |
|
|||||| ||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||| | ||| |
|
|
| T |
19526375 |
gaaggagtttgttctacaaagtctgatgtctatagctttggagtgttgctgcttgaaattgtttgtggaagaaaaaataatagcttttatgatgatcatc |
19526276 |
T |
|
| Q |
101 |
gcccactaaacctaataggacatgtatgtaaatttactcacattgacttttatttttaaaatatatcattccttgttcctaatttgattaaactcctaac |
200 |
Q |
| |
|
| |||||||| ||||| | ||||||||| |||| ||| |||||| | |||||||| | |||| | || ||| ||||||||||| | | ||| |
|
|
| T |
19526275 |
gtccactaaatctaatcaggcatgtatgtcaatt-actttcattgagt---atttttaataaatattacctattcttcataatttgattagattattaat |
19526180 |
T |
|
| Q |
201 |
aggcatgggagctatggaatgatggtgagtatctacagttactggatccatctttatgtgacacatttgttcctgatgaagtgcaaaggtgcattcacgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || || |||||||||||||| |||||||||||||||| ||||||||| ||||||||||||| || |
|
|
| T |
19526179 |
aggcatgggagctatggaatgatggtgagtatctaaagctaatggatccatctttaagtgacacatttgttccggatgaagtgaaaaggtgcattcatgt |
19526080 |
T |
|
| Q |
301 |
tggtct |
306 |
Q |
| |
|
|||||| |
|
|
| T |
19526079 |
tggtct |
19526074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 19551343 - 19551042
Alignment:
| Q |
1 |
gaaggaatttgttcaacaaagtctgatgtttatagctttggagtgttgcttcttgaaattgtttgtggaagaaaaaacaatagcttccatgatgttgatc |
100 |
Q |
| |
|
|||||| ||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
19551343 |
gaaggagtttgttctacaaaatctgatgtctatagctttggagtgttgctgcttgaaattgtttgtggaagaaaaaacaatagcttttatgatggtgatc |
19551244 |
T |
|
| Q |
101 |
gcccactaaacctaataggacatgtatgtaaatttactcacattgacttttatttttaaaatatatcattccttgttcctaatttgattaaactcctaac |
200 |
Q |
| |
|
| |||||||| ||||| |||||||||||| || ||||| |||||| || ||||||| | |||| | || ||| ||||||||||| | | ||| |
|
|
| T |
19551243 |
gtccactaaatctaatcggacatgtatgttaa-ttactttcattgagtt---tttttaataaatattacctattcttcgtaatttgattagattattaat |
19551148 |
T |
|
| Q |
201 |
aggcatgggagctatggaatgatggtgagtatctacagttactggatccatctttatgtgacacatttgttcctgatgaagtgcaaaggtgcattcacgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || || |||||||| | ||| ||||||||||||||| ||||||||| ||||||||||||| || |
|
|
| T |
19551147 |
aggcatgggagctatggaatgatggtgagtatctaaagctaatggatccaacgttaaatgacacatttgttccggatgaagtgaaaaggtgcattcatgt |
19551048 |
T |
|
| Q |
301 |
tggtct |
306 |
Q |
| |
|
|||||| |
|
|
| T |
19551047 |
tggtct |
19551042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 19581345 - 19581646
Alignment:
| Q |
1 |
gaaggaatttgttcaacaaagtctgatgtttatagctttggagtgttgcttcttgaaattgtttgtggaagaaaaaacaatagcttccatgatgttgatc |
100 |
Q |
| |
|
|||||| ||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
19581345 |
gaaggagtttgttctacaaaatctgatgtctatagctttggagtgttgctgcttgaaattgtttgtggaagaaaaaacaatagcttttatgatggtgatc |
19581444 |
T |
|
| Q |
101 |
gcccactaaacctaataggacatgtatgtaaatttactcacattgacttttatttttaaaatatatcattccttgttcctaatttgattaaactcctaac |
200 |
Q |
| |
|
| |||||||| ||||| |||||||||||| || ||||| |||||| || ||||||| | |||| | || ||| ||||||||||| | | ||| |
|
|
| T |
19581445 |
gtccactaaatctaatcggacatgtatgttaa-ttactttcattgagtt---tttttaataaatattacctattcttcgtaatttgattagattattaat |
19581540 |
T |
|
| Q |
201 |
aggcatgggagctatggaatgatggtgagtatctacagttactggatccatctttatgtgacacatttgttcctgatgaagtgcaaaggtgcattcacgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || || |||||||| | ||| ||||||||||||||| ||||||||| ||||||||||||| || |
|
|
| T |
19581541 |
aggcatgggagctatggaatgatggtgagtatctaaagctaatggatccaacgttaaatgacacatttgttccggatgaagtgaaaaggtgcattcatgt |
19581640 |
T |
|
| Q |
301 |
tggtct |
306 |
Q |
| |
|
|||||| |
|
|
| T |
19581641 |
tggtct |
19581646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 19407681 - 19407983
Alignment:
| Q |
1 |
gaaggaatttgttcaacaaagtctgatgtttatagctttggagtgttgcttcttgaaattgtttgtggaagaaaaaacaatagcttccatgatgttgatc |
100 |
Q |
| |
|
|||||| ||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
19407681 |
gaaggagtttgttctacaaaatctgatgtctatagctttggagtgttgctgcttgaaattgtttgtggaaggaaaaacaatagcttttatgatgttgatc |
19407780 |
T |
|
| Q |
101 |
gcccactaaacctaataggacatgtatgtaaatttactcacattgacttttatttttaaaatatatcattccttgttcctaatttgattaaactcctaac |
200 |
Q |
| |
|
|||| |||| ||||| |||||||||||| || ||||| |||||| ||| ||||||| | |||| | || ||| ||||||||||| | | ||| |
|
|
| T |
19407781 |
gccccttaaatctaatcggacatgtatgtcaa-ttactttcattgagttt--tttttaataaatattacctattcttcgtaatttgattatattattaat |
19407877 |
T |
|
| Q |
201 |
aggcatgggagctatggaatgatggtgagtatctacagttactggatccatctttatgtgacacatttgttcctgatgaagtgcaaaggtgcattcacgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || || |||||||| | ||| ||||||||||||||| ||||||||| ||||||||||||| || |
|
|
| T |
19407878 |
aggcatgggagctatggaatgatggtgagtatctaaagctaatggatccaacgttaaatgacacatttgttccggatgaagtgaaaaggtgcattcatgt |
19407977 |
T |
|
| Q |
301 |
tggtct |
306 |
Q |
| |
|
|||||| |
|
|
| T |
19407978 |
tggtct |
19407983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 19415761 - 19416063
Alignment:
| Q |
1 |
gaaggaatttgttcaacaaagtctgatgtttatagctttggagtgttgcttcttgaaattgtttgtggaagaaaaaacaatagcttccatgatgttgatc |
100 |
Q |
| |
|
|||||| ||||||| |||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||| |||||||| |||||| ||||| |
|
|
| T |
19415761 |
gaaggagtttgttctacaaagtctgatgtctatagctttggagtgttgatgcttgaaattgtttgtggaagaaaaaataatagcttttatgatgatgatc |
19415860 |
T |
|
| Q |
101 |
gcccactaaacctaataggacatgtatgtaaatttactcacattgacttttatttttaaaatatatcattccttgttcctaatttgattaaactcctaac |
200 |
Q |
| |
|
| |||||||| ||||| |||||||||||| || ||||| |||||| ||| ||||||| | |||| | || ||| ||||||||||| | | ||| |
|
|
| T |
19415861 |
gtccactaaatctaatcggacatgtatgtcaa-ttactttcattgagttt--tttttaataaatattacctattcttcgtaatttgattagattattaat |
19415957 |
T |
|
| Q |
201 |
aggcatgggagctatggaatgatggtgagtatctacagttactggatccatctttatgtgacacatttgttcctgatgaagtgcaaaggtgcattcacgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || || |||||||| | ||| ||||||||||||||| ||||||||| ||||||||||||| || |
|
|
| T |
19415958 |
aggcatgggagctatggaatgatggtgagtatctaaagctaatggatccaacgttaaatgacacatttgttccggatgaagtgaaaaggtgcattcatgt |
19416057 |
T |
|
| Q |
301 |
tggtct |
306 |
Q |
| |
|
|||||| |
|
|
| T |
19416058 |
tggtct |
19416063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 19289884 - 19290188
Alignment:
| Q |
1 |
gaaggaatttgttcaacaaagtctgatgtttatagctttggagtgttgcttcttgaaattgtttgtggaagaaaaaacaatagcttccatgatgttgatc |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||| |||| ||||||||| ||||||| |||| |||||||||||| |||||||||||| |
|
|
| T |
19289884 |
gaaggaatctgttcaacaaagtctgatgtttatagctttggtgtgctgctacttgaaattatttgtggtagaagaaacaatagcttttatgatgttgatc |
19289983 |
T |
|
| Q |
101 |
gcccactaaacctaataggacatgtatgtaaatttactcacattgacttt-ta-tttttaaaatatatcattccttgttcctaatttgattaaactccta |
198 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| || || |||||| ||| || ||||| | | | || |||| | || |||||||||| ||| || |
|
|
| T |
19289984 |
gcccactaaatctaataggacatgtatgtaaaatttgtctcattgagtttatatttttttatacaaattgttcc-tctttctaatttgataaaataactt |
19290082 |
T |
|
| Q |
199 |
acaggcatgggagctatggaatgatggtgagtatctacagttactggatccatctttatgtgacacatttgttcctgatgaagtgcaaaggtgcattcac |
298 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||||||| |||||||| | ||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19290083 |
ataggcatgggagctatggaataatggtgagtatctacagttaatggatccaacattagacaacacatttgttcctgatgaagtgcagaggtgcattcat |
19290182 |
T |
|
| Q |
299 |
gttggt |
304 |
Q |
| |
|
|||||| |
|
|
| T |
19290183 |
gttggt |
19290188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 19379706 - 19380009
Alignment:
| Q |
1 |
gaaggaatttgttcaacaaagtctgatgtttatagctttggagtgttgcttcttgaaattgtttgtggaagaaaaaacaatagcttccatgatgttgatc |
100 |
Q |
| |
|
|||||| ||||||| ||||||||||| || |||||||||||||||||||| |||||||| ||||| |||| |||||||||||||||| |||||||||||| |
|
|
| T |
19379706 |
gaaggagtttgttctacaaagtctgacgtctatagctttggagtgttgctacttgaaatcgtttgcggaataaaaaacaatagcttctatgatgttgatc |
19379805 |
T |
|
| Q |
101 |
gcccactaaacctaataggacatgtatgtaaatttactcacattgacttttatttttaaaatatatca-ttccttgttcctaatttgattaaactcctaa |
199 |
Q |
| |
|
| |||||||| |||||||||||||||||| |||| || |||||| || ||| ||| | |||| | || ||| | |||| ||||||||| | ||| |
|
|
| T |
19379806 |
gtccactaaatctaataggacatgtatgtcaattctttc-cattga--gttctttgtaataaatattattttgttgcttctaacttgattaaattattaa |
19379902 |
T |
|
| Q |
200 |
caggcatgggagctatggaatgatggtgagtatctacagttactggatccatctttatgtgacacatttgttcctgatgaagtgcaaaggtgcattcacg |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || || |||||||| | ||| ||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
19379903 |
taggcatgggagctatggaatgatggtgagtatctaaagctaatggatccaacattaaatgacacatttgttcctgatgaagtgaaaaggtgcattcatg |
19380002 |
T |
|
| Q |
300 |
ttggtct |
306 |
Q |
| |
|
||||||| |
|
|
| T |
19380003 |
ttggtct |
19380009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 19170339 - 19170032
Alignment:
| Q |
1 |
gaaggaatttgttcaacaaagtctgatgtttatagctttggagtgttgcttcttgaaattgtttgtggaagaaaaaacaatagcttccatgatgttgatc |
100 |
Q |
| |
|
||||| |||||||| || ||||||||||| || |||||||| ||| |||| ||||||||| | |||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
19170339 |
gaagggatttgttctactaagtctgatgtctacagctttggtgtgctgctacttgaaattatctgtggaagaagaaacaatagcttctatgatgttgatc |
19170240 |
T |
|
| Q |
101 |
gcccactaaacctaataggacatgtatgtaaatttactcacattgacttt---tatttt--taaaatatatcattccttgttcctaatttgattaaactc |
195 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| || || |||| | ||| |||||| |||||| ||| |||||| ||||||| |||||| |
|
|
| T |
19170239 |
gcccactaaatctaatcggacatgtatgtactatttgtctcatttagtttatatattttgataaaatttattcttccttt---ctaatttcattaaatat |
19170143 |
T |
|
| Q |
196 |
ctaacaggcatgggagctatggaatgatggtgagtatctacagttactggatccatctttatgtgacacatttgttcctgatgaagtgcaaaggtgcatt |
295 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||||| ||| |||||||| | ||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19170142 |
ctgataggcatgggagctatggaatgatggtgagtatctacaattaatggatccaacattaaatgacacatttgttcctgatgaagtgcaaaagtgcatt |
19170043 |
T |
|
| Q |
296 |
cacgttggtct |
306 |
Q |
| |
|
|| |||||||| |
|
|
| T |
19170042 |
catgttggtct |
19170032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 180 - 306
Target Start/End: Original strand, 19486012 - 19486138
Alignment:
| Q |
180 |
taatttgattaaactcctaacaggcatgggagctatggaatgatggtgagtatctacagttactggatccatctttatgtgacacatttgttcctgatga |
279 |
Q |
| |
|
||||||||||| | | ||| ||||||||||||||||||||||||||||||||||| || || |||||||| | ||| ||||||||||||||| ||||| |
|
|
| T |
19486012 |
taatttgattatattattaataggcatgggagctatggaatgatggtgagtatctaaagctaatggatccaacgttaaatgacacatttgttccggatga |
19486111 |
T |
|
| Q |
280 |
agtgcaaaggtgcattcacgttggtct |
306 |
Q |
| |
|
|||| ||||||||||||| |||||||| |
|
|
| T |
19486112 |
agtgaaaaggtgcattcatgttggtct |
19486138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 15943445 - 15943530
Alignment:
| Q |
1 |
gaaggaatttgttcaacaaagtctgatgtttatagctttggagtgttgcttcttgaaattgtttgtggaagaaaaaacaatagctt |
86 |
Q |
| |
|
|||||||||| ||| || ||||||||||| ||||||||||| ||||| || ||||||||| || | || |||||||| |||||||| |
|
|
| T |
15943445 |
gaaggaattttttctacgaagtctgatgtgtatagctttggggtgttactccttgaaattattagcggtagaaaaaataatagctt |
15943530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 15955267 - 15955319
Alignment:
| Q |
16 |
acaaagtctgatgtttatagctttggagtgttgcttcttgaaattgtttgtgg |
68 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| |||||||||||| |||| |
|
|
| T |
15955267 |
acaaagtctgatgtgtatagctttggagtcttgctccttgaaattgttagtgg |
15955319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 15963500 - 15963459
Alignment:
| Q |
19 |
aagtctgatgtttatagctttggagtgttgcttcttgaaatt |
60 |
Q |
| |
|
||||||||||| ||||||||||||||| |||| ||||||||| |
|
|
| T |
15963500 |
aagtctgatgtgtatagctttggagtgctgctccttgaaatt |
15963459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 19266096 - 19266181
Alignment:
| Q |
1 |
gaaggaatttgttcaacaaagtctgatgtttatagctttggagtgttgcttcttgaaattgtttgtggaagaaaaaacaatagctt |
86 |
Q |
| |
|
|||||| ||| |||||||||||| ||||| ||||| ||||||||| |||| || |||||| | ||| |||||||||||||||| |
|
|
| T |
19266096 |
gaaggagttttttcaacaaagtcagatgtgtatagttttggagtgatgctcctcgaaattatcagtgatggaaaaaacaatagctt |
19266181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 36311192 - 36310893
Alignment:
| Q |
1 |
gaaggaatttgttcaacaaagtctgatgtttatagctttggagtgttgcttcttgaaattgtttgtggaagaaaaaacaatagcttccatgatgttgatc |
100 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||| ||||| |
|
|
| T |
36311192 |
gaaggaatctgttcgacaaagtctgatgtttatagttttggagcgttgcttcttgaaattgtttgtggaag-gaaaacaatagcttctatgatgctgatc |
36311094 |
T |
|
| Q |
101 |
gcccactaaacctaataggacatgtatgtaaatttactcacattgacttttattttta-aaata-tatcattccttgttcctaatttgattaaactccta |
198 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||| | |||| |||| || || ||||| ||| |||||||||| |||||||||||||| | || |
|
|
| T |
36311093 |
gcccactaaatctaataggacatgtatgtgaatat-------ttgagtttttttaatataaatattattattccttgtttctaatttgattaaattatta |
36311001 |
T |
|
| Q |
199 |
acaggcatgggagctatggaatgatggtgagtatctacagttactggatccatctttatgtgacacatttgttcctgatgaagtgcaaaggtgcattcac |
298 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| || || |||||||| | ||| ||||||||||| ||||| ||||||| ||| ||||||||| |
|
|
| T |
36311000 |
ataggcatgggagctatggaatgatggtgagtatctaaagctaatggatccaacattaaatgacacatttgctcctggtgaagtgtaaatgtgcattcat |
36310901 |
T |
|
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