View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_low_43 (Length: 293)
Name: NF20296_low_43
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_low_43 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 270
Target Start/End: Original strand, 16420245 - 16420499
Alignment:
| Q |
17 |
cataggcccatgagactagtaacatgtggtctcattttggttgaagtagtcactcaagaaacgtcattttgaagaagcacggccattgcacttatatgtg |
116 |
Q |
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| T |
16420245 |
cataggcccatgagactagtaacatgtgatctcattttagttgaagtagtcactcaagaaacttcattttgaagaagcacgaccagtgcacttatatgtg |
16420344 |
T |
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| Q |
117 |
aaatcaagtcgtgttgcatattgccttaaatccagcctttcgtacgaggaccacacatattgacattgattgtca-cnnnnnnnagagagaagaacaatt |
215 |
Q |
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| T |
16420345 |
aaatcaagtcgtgttgcatattgccttaaatccagcctttcatacgaggaccacacatattgacattgattgtcagttttttttagagagaagaacaatt |
16420444 |
T |
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| Q |
216 |
tatttctaaaataaaaattagggccaagagattgcatgcaaatgacaaagatgaa |
270 |
Q |
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| T |
16420445 |
tatttctaaaacaaaaattaaggccaagagattgcatgcaaatgacaaagatgaa |
16420499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 179
Target Start/End: Complemental strand, 16476841 - 16476693
Alignment:
| Q |
32 |
ctagtaacatgtggtctcattttggttgaagtagtcactcaagaaacgtcattttgaagaagcacggccattg-cacttatatgtga-aatcaagtcgtg |
129 |
Q |
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| T |
16476841 |
ctagtaacatgtgaactcattt-ggttgaagtagttactcaaggaacttcgattcgaagaagcacgaccaatgacacttatatgtgataatcaagtcgtg |
16476743 |
T |
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| Q |
130 |
ttgcatattgccttaaatccagcctttcgtacgaggaccacacatattga |
179 |
Q |
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| T |
16476742 |
ttgcatattgcctaaaatccagtgattcaaacgaggaccagacatattga |
16476693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 179
Target Start/End: Complemental strand, 45433931 - 45433782
Alignment:
| Q |
31 |
actagtaacatgtggtctcattttggttgaagtagtcactcaagaaacgtcattttgaagaagcacggccattg-cacttatatgtga-aatcaagtcgt |
128 |
Q |
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|||||||||||||| ||||||| |||||||| | | |||||| ||| ||| |||||||||||||| ||| || ||||||||||||| ||||||| ||| |
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| T |
45433931 |
actagtaacatgtgaactcattt-ggttgaagcaattactcaaagaacttcaatttgaagaagcacgaccaatgacacttatatgtgacaatcaagccgt |
45433833 |
T |
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| Q |
129 |
gttgcatattgccttaaatccagcctttcgtacgaggaccacacatattga |
179 |
Q |
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| T |
45433832 |
gttgcatattgcctcaaatccagtctttcatgagaggaccaaacatattga |
45433782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 179
Target Start/End: Complemental strand, 14156849 - 14156700
Alignment:
| Q |
31 |
actagtaacatgtggtctcattttggttgaagtagtcactcaagaaacgtcattttgaagaagcacggccattg-cacttatatgtga-aatcaagtcgt |
128 |
Q |
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| T |
14156849 |
actagtaacatgtgaactcattt-ggttgaagcagttactcaaagaacttcaatttgaagaagtacgaccaatgactcttatatgtgacaatcaagccgc |
14156751 |
T |
|
| Q |
129 |
gttgcatattgccttaaatccagcctttcgtacgaggaccacacatattga |
179 |
Q |
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| T |
14156750 |
gttgcatattgcctcaaattcagtctttcatgagaggaccaaacatattga |
14156700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 19126991 - 19127118
Alignment:
| Q |
25 |
catgagactagtaacatgtggtctcattttggttgaagtagtcactcaagaaacgtcattttgaagaagcacggccattg-cacttatatgtg-aaatca |
122 |
Q |
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| T |
19126991 |
catgacactagtaacatgtgaactca-tttggttgaagcatttactcaaagaacttcaattcgaagaagcatggccaatgacgcttatatgtgaaaataa |
19127089 |
T |
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| Q |
123 |
agtcgtgttgcatattgccttaaatccag |
151 |
Q |
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| T |
19127090 |
agtcatgttgcatatcgcctcaaatccag |
19127118 |
T |
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