View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_low_49 (Length: 278)
Name: NF20296_low_49
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_low_49 |
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| [»] scaffold0018 (2 HSPs) |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 150149 - 150420
Alignment:
| Q |
1 |
aaattcaagcctgagaacattagaaaattcaattccattaatgactaccctgctgcctttgagaacaagaaaatagaagccgccttttttgtcgcacctc |
100 |
Q |
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| T |
150149 |
aaattcaagcctgagaacattagaaaattcaattccattaatgactaccctgctgcctttgagaacaagaaaatagaagccgccttttttgtcgcacctc |
150248 |
T |
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| Q |
101 |
acgctaaagtatttctagcaaagtactcatgtaagggtctcatcaaagcaggaaacactttcaagcttggtggctttggctttgtaagcttctctcctct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| | |
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| T |
150249 |
acgctaaagtatttctagcaaagtactcatgtaagggtctcatcaaagcaggaaacactttcaagcttggtggctttggctttgtgagtttctctccttt |
150348 |
T |
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| Q |
201 |
cattatcactgatttttgacatattggttaattatatttttcaaaaaccgaaccaacttttgtgttatattcttgg |
276 |
Q |
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| T |
150349 |
cattatcactgatttttgacatattgg----ttatatttttcaaaaaccgaaccaacttttgtgttatatttttgg |
150420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 142010 - 142229
Alignment:
| Q |
4 |
ttcaagcctgagaacattagaaaattcaattccattaatgactaccctgctgcctttgagaacaagaaaatagaagccgccttttttgtcgcacctcacg |
103 |
Q |
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||||||| ||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
142010 |
ttcaagcatgagaacatcagaaatttcagttccattaatgactaccctgctgcctttgagaacaaggaaatagaagccgccttttttgtcgcacctcacg |
142109 |
T |
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| Q |
104 |
ctaaagtatttctagcaaagtactcatgtaagggtctcatcaaagcaggaaacactttcaagcttggtggctttggctttgtaagcttctctcctctcat |
203 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||| ||||||||||||||| ||||| | |||||||||||||| |
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| T |
142110 |
ctaaagtatttctagcaaagtacgcatgtaagggcctcatcaaagcagggaacactttcaggcttggtggctttggttttgtgggtttctctcctctcat |
142209 |
T |
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| Q |
204 |
tatcactg-atttttgacat |
222 |
Q |
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| |||||| ||||||||||| |
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| T |
142210 |
tgtcactgaatttttgacat |
142229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 7 - 214
Target Start/End: Original strand, 24988079 - 24988286
Alignment:
| Q |
7 |
aagcctgagaacattagaaaattcaattccattaatgactaccctgctgcctttgagaacaagaaaatagaagccgccttttttgtcgcacctcacgcta |
106 |
Q |
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||||||||||| ||||| ||| | |||||||| | |||||||||||||||||||||||| ||| |||| |||||||| || ||||| || ||||| |||| |
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| T |
24988079 |
aagcctgagaatattaggaaaataaattccatgagtgactaccctgctgcctttgagaagaaggaaattgaagccgcattctttgttgcgcctcatgcta |
24988178 |
T |
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| Q |
107 |
aagtatttctagcaaagtactcatgtaagggtctcatcaaagcaggaaacactttcaagcttggtggctttggctttgtaagcttctctcctctcattat |
206 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||| || |||| ||||| |||||| |||||||| ||||| | ||||||||||||||| | |
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| T |
24988179 |
aagtatttctagcaaagtactcgtgtaagggcttcatcaaagtggggaacattttcaggcttggcggctttggttttgtgggtttctctcctctcattgt |
24988278 |
T |
|
| Q |
207 |
cactgatt |
214 |
Q |
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|||||||| |
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| T |
24988279 |
cactgatt |
24988286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 7 - 214
Target Start/End: Original strand, 24899150 - 24899357
Alignment:
| Q |
7 |
aagcctgagaacattagaaaattcaattccattaatgactaccctgctgcctttgagaacaagaaaatagaagccgccttttttgtcgcacctcacgcta |
106 |
Q |
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||||||||||| ||||| ||| | |||||||| | |||||||||||||||||||||||| ||| |||| |||||||| || ||||| || ||||| |||| |
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| T |
24899150 |
aagcctgagaatattaggaaaataaattccatgagtgactaccctgctgcctttgagaagaaggaaattgaagccgcattctttgttgcgcctcatgcta |
24899249 |
T |
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| Q |
107 |
aagtatttctagcaaagtactcatgtaagggtctcatcaaagcaggaaacactttcaagcttggtggctttggctttgtaagcttctctcctctcattat |
206 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||| || ||| ||||| |||||| |||||||| ||||| | ||||||||||||||| | |
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| T |
24899250 |
aagtatttctagcaaagtactcgtgtaagggcttcatcaaagtggggaacgttttcaggcttggcggctttggttttgtgggtttctctcctctcattgt |
24899349 |
T |
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| Q |
207 |
cactgatt |
214 |
Q |
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|||||||| |
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| T |
24899350 |
cactgatt |
24899357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 7 - 217
Target Start/End: Original strand, 24911311 - 24911521
Alignment:
| Q |
7 |
aagcctgagaacattagaaaattcaattccattaatgactaccctgctgcctttgagaacaagaaaatagaagccgccttttttgtcgcacctcacgcta |
106 |
Q |
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||||||||||| ||||| ||| | |||||||| | ||||||| |||||||||||||||| ||| |||| ||||| ||||| ||||| || ||||| |||| |
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| T |
24911311 |
aagcctgagaatattaggaaaataaattccatgagtgactacgctgctgcctttgagaagaaggaaattgaagctgccttctttgttgcgcctcatgcta |
24911410 |
T |
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| Q |
107 |
aagtatttctagcaaagtactcatgtaagggtctcatcaaagcaggaaacactttcaagcttggtggctttggctttgtaagcttctctcctctcattat |
206 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||| || ||| ||||| |||||| |||||||| ||||| | ||||||||||||||| | |
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| T |
24911411 |
aagtctttctagcaaagtactcatgtaagggcttcatcaaagtggggaacgttttcaggcttggcggctttggttttgtgggtttctctcctctcattgt |
24911510 |
T |
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| Q |
207 |
cactgattttt |
217 |
Q |
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||||||||||| |
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| T |
24911511 |
cactgattttt |
24911521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 24375 - 24436
Alignment:
| Q |
87 |
ttttgtcgcacctcacgctaaagtatttctagcaaagtactcatgtaagggtctcatcaaag |
148 |
Q |
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|||||| || ||||| |||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
24375 |
ttttgttgcgcctcatgctaaagtatttctagcaaagtactcgtgtaagggcttcatcaaag |
24436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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