View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_low_5 (Length: 612)
Name: NF20296_low_5
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 9 - 588
Target Start/End: Original strand, 11859061 - 11859646
Alignment:
| Q |
9 |
agagagaagaaggagattatagataaactgctgaagatgaacaaggttgatactgctgttccttttgtaattgctattgttggtgttcctggaattggca |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11859061 |
agagagaagaaggagattatagataaactgctgaagatgaacaaggttgatactgctgttccttttgtaattgctattgttggtgttcctggaattggca |
11859160 |
T |
|
| Q |
109 |
aaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaagggagttctggtttccaagcaatttggatcaatggccctcatcaccaatttgatgt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
11859161 |
aaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaagggagttctggtttccaagcaatttggatcaatggtcttcatcaccaatttgatgt |
11859260 |
T |
|
| Q |
209 |
tgaatccatagtaaaatgtgttactgatcagtctgatcatgagaaacgcatcttacttgttatagatgatttgcgaattgagattaagaatgatgatctc |
308 |
Q |
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|||||||||||||||| | |||||||||| || || |||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
11859261 |
tgaatccatagtaaaaagcgttactgatcggtatgttcataagaaacgcgtcttacttgttatagatgatttgcgaattgagattgagaatggtgatctc |
11859360 |
T |
|
| Q |
309 |
aagaagttgcagaagaaattaatggaggctgctggcggaaggactgataccgcgatacttgttacaacaacacgaagcaaccatgttgccaacgacattg |
408 |
Q |
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| T |
11859361 |
gagaagttgcagaagaaattagcgcaggctgcaggtggaaggactgataccgtcatacttgttacaacaacacgaagcagccatgttgccaacaaaattg |
11859460 |
T |
|
| Q |
409 |
ctactagacttgttttgaaattggaggagcttaatcaggaggaatcttggtcattgtttcagcagattcatggaccaattacttcagccaaaaaagaaca |
508 |
Q |
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|| |||||| ||||||||| ||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
11859461 |
ctgctagacatgttttgaagttgcaggggcttaatcaagaggaatcttggtcattgtttcagcagattcatggaccaattacttcaaccaaaaaagtgca |
11859560 |
T |
|
| Q |
509 |
aagcaccattgaacc------tgaacatgaacgggagatcgtggagggttgtggtggagttcctcttttgattgtgatcgtagcga |
588 |
Q |
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| T |
11859561 |
aagcaccactgaacccgaacgtgaacctgaacgggagattgtggaaggttgtgctggagttcctcttttgattgtgatcgtagcga |
11859646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 12 - 482
Target Start/End: Original strand, 12037862 - 12038317
Alignment:
| Q |
12 |
gagaagaaggagattatagataaactgctgaagatgaacaaggttgatactgctgttccttttgtaattgctattgttggtgttcctggaattggcaaaa |
111 |
Q |
| |
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|||||| | ||| |||||||||||||| |||| |||| || |||| ||||||||||| |||| |||| ||||||||||||||||||||||||||||| |
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| T |
12037862 |
gagaaggaagagcttatagataaactggtgaacctgaagaacactgatgctgctgttcctgttgttattgttattgttggtgttcctggaattggcaaaa |
12037961 |
T |
|
| Q |
112 |
caaaacttgctcgtctcgtttgtgaagatgagcaagtcaaagggagttctggtttccaagcaatttggatcaatggccctcatcaccaatttgatgttga |
211 |
Q |
| |
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|||||||||||| |||||||||||| |||||||||||| || || || ||| || ||| ||||||||||||| ||| ||||||||||| |
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| T |
12037962 |
caaaacttgctcatctcgtttgtgaggatgagcaagtcgaaatgaattttgggttacaaccaatttggatcaa----------aacc--tttgatgttga |
12038049 |
T |
|
| Q |
212 |
atccatagtaaaatgtgttactgatcagtctgatcatgagaaacgcatcttacttgttatagatgatttgcgaattgagatta---agaatgatgatctc |
308 |
Q |
| |
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||| |||| |||| ||||| | | ||||| |||||||||||||| ||||||||||||||||||||||| || ||||||||| || |||| |||| |
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| T |
12038050 |
atctatagcaaaaagtgttgccg---agtctcatcatgagaaacgcctcttacttgttatagatgatttgagatttgagattaatgagcctgattatctt |
12038146 |
T |
|
| Q |
309 |
aagaagttgcagaagaaattaatggaggctgctggcggaaggactgataccgcgatacttgttacaacaacacgaagcaaccatgttgccaacgacattg |
408 |
Q |
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||||||||||||||||||||| || |||| ||| || | ||||||| || ||||| || || ||||| || |||||||| ||| || |||||| |
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| T |
12038147 |
gagaagttgcagaagaaattaactgaagctgttggtggccgtgctgatacggccatactcatt---actacacgtagtaaccatgtcgccgacaacattg |
12038243 |
T |
|
| Q |
409 |
ctactagacttgttttgaaattggaggagcttaatcaggaggaatcttggtcattgtttcagcagattcatgga |
482 |
Q |
| |
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|| || ||| ||||||||| ||| ||| ||||||||| ||||| |||||||| |||||| || | ||||||||| |
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| T |
12038244 |
ctgctggacatgttttgaagttgcaggggcttaatcaagaggattcttggtccttgtttgaggaaattcatgga |
12038317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 260 - 523
Target Start/End: Original strand, 11827171 - 11827434
Alignment:
| Q |
260 |
cttacttgttatagatgatttgcgaattgagattaagaa---tgatgatctcaagaagttgcagaagaaattaatggaggctgctggcggaaggactgat |
356 |
Q |
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||||||| |||||||||||||| |||||| |||||| || |||||| ||| ||||||| ||||||||||| ||||||| |||||| || | || || |
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| T |
11827171 |
cttacttattatagatgatttgagaattgcgattaataagcatgatgacctcgagaagttacagaagaaattgatggaggttgctggtggccgtaccaat |
11827270 |
T |
|
| Q |
357 |
accgcgatacttgttacaacaacacgaagcaaccatgttgccaacgacattgctactagacttgttttgaaattggaggagcttaatcaggaggaatctt |
456 |
Q |
| |
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|||| |||||| |||| ||| | ||||||||||| |||||| | |||| | ||| | ||||||||| ||| ||| ||||||||| ||||||||| |
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| T |
11827271 |
accgtgatactcattaccacat---gtagcaaccatgtcgccaacaatattggtgctacatatgttttgaagttgcaggggcttaatcaaaaggaatctt |
11827367 |
T |
|
| Q |
457 |
ggtcattgtttcagcagattcatggaccaattacttcagccaaaaaagaacaaagcaccattgaacc |
523 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||| ||||| |
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| T |
11827368 |
ggtcattgtttcagcagatttatggaccaattacttcaaccaaaaaagcacaaagcaccatcgaacc |
11827434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 61 - 153
Target Start/End: Original strand, 11826945 - 11827037
Alignment:
| Q |
61 |
ctgctgttccttttgtaattgctattgttggtgttcctggaattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaag |
153 |
Q |
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| T |
11826945 |
ctgctgttcctgtttttattgctattgttggtgttactggaattgggaaaacaaaacttgctcatctcgtttgtgaggacgagcaagtcaaag |
11827037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 11903379 - 11903281
Alignment:
| Q |
84 |
attgttggtgttcctggaattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaagggagttctggtttccaagcaatttggatc |
182 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||| |||| ||||| |||||||| |||||||||| || ||||||| || ||||||||||| |
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| T |
11903379 |
attgttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttggtttcgaaccaatttggatc |
11903281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 11730826 - 11730895
Alignment:
| Q |
84 |
attgttggtgttcctggaattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaag |
153 |
Q |
| |
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|||||||||||||| ||||| || || ||||||||||| || || ||||| || |||||||||||||||| |
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| T |
11730826 |
attgttggtgttccgggaatagggaagacaaaacttgcacggcttgtttgcgaggatgagcaagtcaaag |
11730895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 11730382 - 11730451
Alignment:
| Q |
84 |
attgttggtgttcctggaattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaag |
153 |
Q |
| |
|
|||||||||||| | ||||| || || ||||||||||| ||||| ||||| | |||||||||||||||| |
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| T |
11730382 |
attgttggtgtttcaggaataggaaagacaaaacttgcacgtcttgtttgcaaggatgagcaagtcaaag |
11730451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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