View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_low_50 (Length: 268)
Name: NF20296_low_50
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 1558032 - 1558273
Alignment:
| Q |
9 |
gataatactgagtgtgtgttcttgccagcaaaccattatttatccattgttatttgcgatgttccgataacagtttacatttgtcggcttatagccatat |
108 |
Q |
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| T |
1558032 |
gataatactgagtgtgtgttcttgccagcaaaccattatttatccattgttatttgcgatgttccgataacagtttacatttgtcggcttatagccatat |
1558131 |
T |
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| Q |
109 |
tctttttctatgctaaatnnnnnnnnctgtttttgttttgttgttgatgagataaagcaaatgtagtaacatgagtttttacagctgtcatgtggtttta |
208 |
Q |
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| T |
1558132 |
tctttttctatgctaaataaaaaaaactgtttttgttttgttgttgatgagataaagcaaatgtagtaacatgagtttttacagctgtcatgtggtttta |
1558231 |
T |
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| Q |
209 |
tcaagtttcaaattattgggttataaaaaatagtgctaatgg |
250 |
Q |
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| T |
1558232 |
tcaagtttcaaattattgggttataaaaaatagtgctaatgg |
1558273 |
T |
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Back To:
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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 23891386 - 23891488
Alignment:
| Q |
21 |
tgtgtgttcttgccagcaaaccattatttatccattgttatttgcgatgttccgataacagtttacatttgtcggcttatagccatattctttttctatg |
120 |
Q |
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| T |
23891386 |
tgtgtcttcttgcctgaaaacaattatttatccattgttagttgcgatgtttcgataacagttcacatttgtaggcttatagccat-ttttttttctacg |
23891484 |
T |
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| Q |
121 |
ctaa |
124 |
Q |
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|||| |
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| T |
23891485 |
ctaa |
23891488 |
T |
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