View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_low_54 (Length: 251)
Name: NF20296_low_54
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_low_54 |
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| [»] chr7 (3 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 36724662 - 36724904
Alignment:
| Q |
9 |
tcaagaagatgcgttacacgttcaatcacctgcatatttgtttcgttcctttgctggcaaagtttcaagttcctctatttcataaactccataaaactgt |
108 |
Q |
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| T |
36724662 |
tcaagaagatgcgttgctcgttcaaccacctgcatatttgtttcgttcctttgctggcaaagtttcaagttcctctctttcataaactccataaaactgt |
36724761 |
T |
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| Q |
109 |
ggtaaagagtttactttggctcaggctaagctggtgtaaaagggtaaagacaaccacgtccatattataattttggcgtagaattctatcaattttgtcc |
208 |
Q |
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| T |
36724762 |
ggtaaagagtttactttggctcgggctaagctggtgtaaaagggtaaagacaaccacgtccatattataattttggcgtagaattctatcaattttgtcc |
36724861 |
T |
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| Q |
209 |
cataaatacacatcatgccaaacctgcacaacattaggacact |
251 |
Q |
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| T |
36724862 |
cataaatacacatcatgccaaacctgcacaacattaggacact |
36724904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 27 - 251
Target Start/End: Complemental strand, 717053 - 716825
Alignment:
| Q |
27 |
cgttcaatcacctgcatatttgtttcgttcctttgctggcaaagtttcaagttcct-ctatttcataaactccataaaactgtggtaaagagtttacttt |
125 |
Q |
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||||||| ||||||||| |||||||| ||| ||||| ||||||||||||||||| || || |||||||||||||||| ||| | |||||||| ||||| |
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| T |
717053 |
cgttcaaccacctgcatgtttgtttcattcttttgccaccaaagtttcaagttccttctcttccataaactccataaaaatgttgcaaagagttcacttt |
716954 |
T |
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| Q |
126 |
ggctcaggctaagctggtgtaaaagggtaaagacaaccacgtccatattataattttggcgtagaatt---ctatcaattttgtcccataaatacacatc |
222 |
Q |
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| T |
716953 |
ggctcgagccaagctggtgcagaagggtaaagaccaccacatctatattataattttcgcgaagaattatactaccaattttgtcccataaattcacatc |
716854 |
T |
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| Q |
223 |
atgccaaacctgcacaacattaggacact |
251 |
Q |
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| T |
716853 |
actccaaaccaacacaacattaggacact |
716825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 711846 - 711791
Alignment:
| Q |
27 |
cgttcaatcacctgcatatttgtttcgttcctttgctggcaaagtttcaagttcct |
82 |
Q |
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| T |
711846 |
cgttcaaccacctgcatgtttgtttcgttcttttgctgccaaggtttcaagttcct |
711791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 14540274 - 14540027
Alignment:
| Q |
9 |
tcaagaagatgcgttacacgttcaatcacctgcatatttgtttcgttcctttgctggcaaagtttcaagttcct-ctatttcataaactccataaaactg |
107 |
Q |
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| T |
14540274 |
tcaagaaggtgtgttgctcgttcacccacctgcgtatttgttttgttcttttgctgccaaagtttccagttatttcccttccataaactccataaaacta |
14540175 |
T |
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| Q |
108 |
tggtaaagagttt---actttggctcaggctaagctggtgtaaaagggtaaagacaaccacgtccatattataattttggcgtagaattctatcaa-ttt |
203 |
Q |
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||| |||||||| ||||| |||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||| || ||||||||||||| ||| |
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| T |
14540174 |
tggcaaagagttgttcacttttgctcagactaagctggtgtagaagggtaaagaccaccacgtccatattataattttgacgaagaattctatcaatttt |
14540075 |
T |
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| Q |
204 |
tgtcccataaatacacatcatgccaaacctgcacaacattaggacact |
251 |
Q |
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| T |
14540074 |
tttcccgtagattcatatcatgccaaacctacacaatattaggacact |
14540027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 249
Target Start/End: Complemental strand, 36473646 - 36473564
Alignment:
| Q |
167 |
tccatattataattttggcgtagaattctatcaattttgtcccataaatacacatcatgccaaacctgcacaacattaggaca |
249 |
Q |
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| T |
36473646 |
tccatattataattttggtgaagtactctatcaatactttcccacaaatttacatcacgccaaacctgcacaacattaggaca |
36473564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 29094663 - 29094735
Alignment:
| Q |
173 |
ttataattttggcgtagaattctatcaattttgtcccataaatacacatcatgccaaacctgcacaacattag |
245 |
Q |
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| T |
29094663 |
ttataattttggcgcataacgctatttattttgtcccataaattcacatcatgccacgcctgaacaactttag |
29094735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 12715536 - 12715584
Alignment:
| Q |
167 |
tccatattataattttggcgtagaattctatcaattttgtcccataaat |
215 |
Q |
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| T |
12715536 |
tccatattataatttttgcgaagagttctatcaattgtgtcccataaat |
12715584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 12776767 - 12776815
Alignment:
| Q |
167 |
tccatattataattttggcgtagaattctatcaattttgtcccataaat |
215 |
Q |
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| T |
12776767 |
tccatattataatttttgcgaagagttctatcaattgtgtcccataaat |
12776815 |
T |
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