View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20296_low_58 (Length: 240)

Name: NF20296_low_58
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20296_low_58
NF20296_low_58
[»] chr6 (3 HSPs)
chr6 (1-221)||(11191543-11191763)
chr6 (75-158)||(10084609-10084692)
chr6 (96-179)||(34374328-34374411)
[»] chr4 (1 HSPs)
chr4 (70-175)||(10494392-10494497)
[»] chr2 (2 HSPs)
chr2 (77-178)||(32162488-32162589)
chr2 (1-73)||(10311462-10311534)
[»] chr5 (1 HSPs)
chr5 (75-177)||(18251860-18251962)
[»] chr3 (1 HSPs)
chr3 (70-140)||(3064246-3064316)
[»] chr8 (1 HSPs)
chr8 (110-179)||(2688645-2688714)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11191763 - 11191543
Alignment:
Q  1 cttgtaacaccattaaacacttagactagatttgatatgtgtttggctaagcatgaaatttagatttacaatcctggtactagatgaccaatccatgagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11191763 cttgtaacaccattaaacacttagactagatttgatatgtgtttggctaagcatgaaatttagatttacaatcgtggtactagatgaccaatccatgagt 11191664  T
Q  101 ggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacatatcgatccggtggtttcttcgacaacagctagctattgaaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11191663 ggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacatatcgatccggtggtttcttcgacaacagctagctattgaaga 11191564  T
Q  201 tccgatgattttagtagcggg 221  Q
    |||||||||||||||||||||    
T  11191563 tccgatgattttagtagcggg 11191543  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 75 - 158
Target Start/End: Complemental strand, 10084692 - 10084609
Alignment:
Q  75 tggtactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacat 158  Q
    |||||| |||||||||| || ||||||||||||||||||||||||||||||||||| || ||||||||||| || |||||||||    
T  10084692 tggtaccagatgaccaacccgtgagtggtgacaatttttgtaaaataacataatcaaatggttggtcgatacctgtaacaacat 10084609  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 179
Target Start/End: Original strand, 34374328 - 34374411
Alignment:
Q  96 tgagtggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacatatcgatccggtggtttcttcg 179  Q
    |||||||||  |||||||||||| ||| |||||||||| ||||||||||| || || |||||  ||||||||||||||||||||    
T  34374328 tgagtggtgtaaatttttgtaaagtaatataatcagatggttggtcgatatctgtagcaacacgtcgatccggtggtttcttcg 34374411  T

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Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 10494497 - 10494392
Alignment:
Q  70 aatcctggtactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacatatcgatccggt 169  Q
    |||| |||||||||||||||||||| |||||||||  |||||||||||| |||||||||||||| ||||||||||| ||||| |||||  ||||||| ||    
T  10494497 aatcatggtactagatgaccaatccgtgagtggtgtgaatttttgtaaagtaacataatcagatggttggtcgatacctatagcaacacgtcgatccagt 10494398  T
Q  170 ggtttc 175  Q
    ||||||    
T  10494397 ggtttc 10494392  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 32162488 - 32162589
Alignment:
Q  77 gtactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacatatcgatccggtggtttct 176  Q
    |||||||||||||||||||||||| |||  ||||| |||||| |||||||||||||| |||||| |||| |||||||||||  |||||||  ||||||||    
T  32162488 gtactagatgaccaatccatgagtagtgggaatttctgtaaattaacataatcagatggttggttgatacctataacaacacgtcgatccaatggtttct 32162587  T
Q  177 tc 178  Q
    ||    
T  32162588 tc 32162589  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 10311462 - 10311534
Alignment:
Q  1 cttgtaacaccattaaacacttagactagatttgatatgtgtttggctaagcatgaaatttagatttacaatc 73  Q
    ||||||||||||| ||||| || | || |||||||| ||||  |||||||||||| |||  ||||||||||||    
T  10311462 cttgtaacaccataaaacagttgggctggatttgatctgtgcctggctaagcatgtaatgaagatttacaatc 10311534  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 177
Target Start/End: Complemental strand, 18251962 - 18251860
Alignment:
Q  75 tggtactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacatatcgatccggtggttt 174  Q
    |||||| ||||||||||||| | |||||||  |||||||||||| ||| |||||||||| |||||| |||| || || || || |||||||| |||||||    
T  18251962 tggtacgagatgaccaatccgtaagtggtgggaatttttgtaaagtaatataatcagatggttggttgatacctgtagcatcacatcgatccagtggttt 18251863  T
Q  175 ctt 177  Q
    |||    
T  18251862 ctt 18251860  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 3064246 - 3064316
Alignment:
Q  70 aatcctggtactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggt 140  Q
    |||| ||||||||| |||||||||| ||||| |||  |||||||||||| ||||||||||| || ||||||    
T  3064246 aatcgtggtactaggtgaccaatccttgagttgtggaaatttttgtaaagtaacataatcaaatggttggt 3064316  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 2688714 - 2688645
Alignment:
Q  110 ttttgtaaaataacataatcagattgttggtcgataactataacaacatatcgatccggtggtttcttcg 179  Q
    ||||||||| ||||||||||  || ||||||||||| || || |||||  ||||||| ||||||||||||    
T  2688714 ttttgtaaagtaacataatcgtatggttggtcgatatctgtagcaacacgtcgatccagtggtttcttcg 2688645  T

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