View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_low_59 (Length: 240)
Name: NF20296_low_59
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 46913754 - 46913966
Alignment:
| Q |
18 |
ttatcttcctcctcctctttatcattctcctcctcttcatctccgccatcgcctcccaagctcaataaccaacgccacatcgccacagtggtttctccag |
117 |
Q |
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| T |
46913754 |
ttatcttcctcctcctctttatcattctcctcctcttcatctccgccatcacctccgaagctcaataaccaacgccacatcgccacagtagtttctccag |
46913853 |
T |
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| Q |
118 |
gaggttggtgtaaaaatattaaatgccaaggttttaaataatgatcgcggttgtacgtaatagttattgtagcatcactatcacaatattaaaccatgtt |
217 |
Q |
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| T |
46913854 |
gaggttggtgtaaaaatattaaatgccaaggttttaaataatgatcgcgattgtaagtaatagttattgtggcatcactatcacaatactaaaccatgtt |
46913953 |
T |
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| Q |
218 |
aagaattatctac |
230 |
Q |
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|||| |||||||| |
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| T |
46913954 |
aagagttatctac |
46913966 |
T |
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