View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_low_6 (Length: 574)
Name: NF20296_low_6
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 16 - 557
Target Start/End: Complemental strand, 42275896 - 42275360
Alignment:
| Q |
16 |
aatattgtccaaattggcaaaggcaatagaaagcaagtacaataaagcgtgtggtccttgctttaagacaatagattgtcacagatcttcttcaaacttc |
115 |
Q |
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| T |
42275896 |
aatattgtccaaattggcaaaggcaatagaaagcaagtacaataaagcgtgtggtccttgctttaagacaatagattgtcacagatcttcttcaaacttc |
42275797 |
T |
|
| Q |
116 |
aaagccattggaacaacctgcacgtaatgtagtatcatattttgatgctttccatattctcttctcttcctaccgcaacttcatttaaagaaacctactc |
215 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42275796 |
aaagccattgcaacaacctgcacgtaatgtagtatcatattttgatgctttccatattctcttctcttcctaccgcaactccatttaaagaaacctactc |
42275697 |
T |
|
| Q |
216 |
ttagctcaaaaattgcaccaatttgtacaagtctaagccaaaacaacttgatggcaaaatgcacaaagtctctagttatgttcccaatcctcttgcaaac |
315 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42275696 |
ttagctcaaaaattgcaccaatt-gtacaagtctaagccaaaacaacttgatggcaaaatgcacaaagtctctagttatgttcccaatcctcttgcaaac |
42275598 |
T |
|
| Q |
316 |
tatatgcttccttttgttcccacaacctctaatgtctcaagaaaacaattttgttcgtcaaccagctagtcagctcatcatcactccccatcaacgctcc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42275597 |
tatatgcttccttttgttcccacaacctctaatgtctcaagaaaacaattttgttcgtcaaccagctagtcagctcatcatcactccccatcaacgctcc |
42275498 |
T |
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| Q |
416 |
aattcagaacctcaacaggttcattataaattttagttaccttaactcattgataaattcatatattttgtcacactaaataaaccaaccagtcacaaac |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42275497 |
aattcagaacctcaacaggttcattataaattttagttaccttaactcattgataaattcatatattttgtcacactaaataa----accagtcacaaac |
42275402 |
T |
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| Q |
516 |
tcatttagtgaaaaatttcaaaacaaatttgactataatcat |
557 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42275401 |
tcatttagtgaaaaaattcaaaacaaatttgactataatcat |
42275360 |
T |
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