View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20296_low_64 (Length: 232)

Name: NF20296_low_64
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20296_low_64
NF20296_low_64
[»] chr7 (1 HSPs)
chr7 (14-216)||(34841632-34841834)
[»] chr1 (1 HSPs)
chr1 (15-208)||(45452478-45452671)
[»] chr4 (4 HSPs)
chr4 (15-94)||(5532564-5532643)
chr4 (21-214)||(5934730-5934923)
chr4 (15-94)||(38177174-38177253)
chr4 (21-214)||(5921270-5921463)
[»] chr3 (1 HSPs)
chr3 (14-100)||(53146180-53146266)
[»] chr2 (1 HSPs)
chr2 (21-94)||(11732030-11732103)
[»] chr8 (2 HSPs)
chr8 (30-103)||(40916449-40916522)
chr8 (36-100)||(45320361-45320425)


Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 34841632 - 34841834
Alignment:
Q  14 agaggtggatgagcaaatgataaatgtccagaacaagaactcttcctactttgttgagtggatccccaacaatgttaagtcaagtgtttgcgacattgct 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34841632 agaggtggatgagcaaatgataaatgtccagaacaagaactcttcctactttgttgagtggatccccaacaatgttaagtcaagtgtttgtgacattgct 34841731  T
Q  114 cctagaggtctctccatggcctccacctttatcggtaactcaacctcaattcaggaaatgtttaggagggtgagcgagcaatttaccgctatgtttagga 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34841732 cctagaggtctctccatggcctccacctttatcggtaactcaacctcaattcaggaaatgtttaggagggtgagcgagcaatttaccgctatgtttagga 34841831  T
Q  214 gga 216  Q
    |||    
T  34841832 gga 34841834  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 45452671 - 45452478
Alignment:
Q  15 gaggtggatgagcaaatgataaatgtccagaacaagaactcttcctactttgttgagtggatccccaacaatgttaagtcaagtgtttgcgacattgctc 114  Q
    ||||| |||||||| ||||| ||||| ||||||||||| || || ||||||||||||||||| ||||||||||| || || | ||| || || ||  |||    
T  45452671 gaggttgatgagcagatgatcaatgttcagaacaagaattcatcatactttgttgagtggattcccaacaatgtgaaatccactgtctgtgatatccctc 45452572  T
Q  115 ctagaggtctctccatggcctccacctttatcggtaactcaacctcaattcaggaaatgtttaggagggtgagcgagcaatttaccgctatgtt 208  Q
    | |  |||||    ||||| || || ||||| |||||||| || || ||||| |||||||||||||||||||| |||||||| || ||||||||    
T  45452571 caactggtcttaaaatggcttctacttttattggtaactccacatctattcaagaaatgtttaggagggtgagtgagcaattcacggctatgtt 45452478  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 5532564 - 5532643
Alignment:
Q  15 gaggtggatgagcaaatgataaatgtccagaacaagaactcttcctactttgttgagtggatccccaacaatgttaagtc 94  Q
    ||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||| || |||||||| |||||    
T  5532564 gaggttgatgaacaaatgatgaatgtccagaacaagaactcatcctactttgttgaatggattccaaacaatgtgaagtc 5532643  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 5934923 - 5934730
Alignment:
Q  21 gatgagcaaatgataaatgtccagaacaagaactcttcctactttgttgagtggatccccaacaatgttaagtcaagtgtttgcgacattgctcctagag 120  Q
    ||||| |||||||| ||||| |||||||||||||| |||||||| ||||| ||||| || |||||||| || |||| |||||| || ||| | || | ||    
T  5934923 gatgaacaaatgatcaatgttcagaacaagaactcatcctacttcgttgaatggattccaaacaatgtcaaatcaactgtttgtgatattccaccaacag 5934824  T
Q  121 gtctctccatggcctccacctttatcggtaactcaacctcaattcaggaaatgtttaggagggtgagcgagcaatttaccgctatgtttaggag 214  Q
    |  |    ||||| || || || ||||| |||||||| |||||||| ||||||||  | |||||||| ||||| ||||| |||||||| |||||    
T  5934823 ggttgaagatggcttctacattcatcggaaactcaacttcaattcaagaaatgttccgaagggtgagtgagcagtttactgctatgttcaggag 5934730  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 38177253 - 38177174
Alignment:
Q  15 gaggtggatgagcaaatgataaatgtccagaacaagaactcttcctactttgttgagtggatccccaacaatgttaagtc 94  Q
    |||||||| ||||| ||||| ||||| |||||||| |||||||| ||||||||||||||||| |||||||| || |||||    
T  38177253 gaggtggacgagcagatgattaatgtacagaacaaaaactcttcttactttgttgagtggatacccaacaacgtcaagtc 38177174  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 5921463 - 5921270
Alignment:
Q  21 gatgagcaaatgataaatgtccagaacaagaactcttcctactttgttgagtggatccccaacaatgttaagtcaagtgtttgcgacattgctcctagag 120  Q
    ||||| |||||||| ||||| |||||||||||||| |||||||| || || ||||| || |||||||| || |||| |||||| || ||| | || | ||    
T  5921463 gatgaacaaatgatcaatgttcagaacaagaactcatcctacttcgtcgaatggattccaaacaatgtcaaatcaactgtttgtgatattccaccaacag 5921364  T
Q  121 gtctctccatggcctccacctttatcggtaactcaacctcaattcaggaaatgtttaggagggtgagcgagcaatttaccgctatgtttaggag 214  Q
    |  |    ||||| || || || ||||| |||||||| |||||||| ||||||||  | |||||||| ||||| ||||| |||||||| |||||    
T  5921363 ggttgaagatggcttctacattcatcggaaactcaacttcaattcaagaaatgttccgaagggtgagtgagcagtttactgctatgttcaggag 5921270  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 53146266 - 53146180
Alignment:
Q  14 agaggtggatgagcaaatgataaatgtccagaacaagaactcttcctactttgttgagtggatccccaacaatgttaagtcaagtgt 100  Q
    |||||| ||||| ||||| || ||||| ||||||||||| ||||| ||||||||||| ||||| ||||||||||| ||||| |||||    
T  53146266 agaggttgatgaacaaatcatcaatgtgcagaacaagaattcttcatactttgttgaatggattcccaacaatgtgaagtctagtgt 53146180  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 11732103 - 11732030
Alignment:
Q  21 gatgagcaaatgataaatgtccagaacaagaactcttcctactttgttgagtggatccccaacaatgttaagtc 94  Q
    |||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||| || || |||||||||||    
T  11732103 gatgagcagatgatcaatgtgcaaaacaagaactcttcatactttgttgagtggataccaaataatgttaagtc 11732030  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 40916522 - 40916449
Alignment:
Q  30 atgataaatgtccagaacaagaactcttcctactttgttgagtggatccccaacaatgttaagtcaagtgtttg 103  Q
    ||||||||||| |||||||||||||| || |||||||| || ||||| || |||||||| || |||||||||||    
T  40916522 atgataaatgttcagaacaagaactcgtcttactttgtggaatggattccaaacaatgtgaaatcaagtgtttg 40916449  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 45320361 - 45320425
Alignment:
Q  36 aatgtccagaacaagaactcttcctactttgttgagtggatccccaacaatgttaagtcaagtgt 100  Q
    ||||| ||||||||||| ||||| ||||| ||||| ||||| ||||| ||||| ||||| |||||    
T  45320361 aatgtgcagaacaagaattcttcttacttcgttgaatggattcccaataatgtgaagtccagtgt 45320425  T

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