View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_low_65 (Length: 232)
Name: NF20296_low_65
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_low_65 |
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Alignment Details
Target: chr7 (Bit Score: 112; Significance: 9e-57; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 82 - 217
Target Start/End: Original strand, 31797184 - 31797319
Alignment:
| Q |
82 |
aattggtcatttgtcatggcatgtttcaatcctgaaacgggggagtatcaaagtgtatgccgagttatctttgggttcaccgtctctttttacataagac |
181 |
Q |
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| T |
31797184 |
aattggtcatttgtcatggcacgtttcaatcctgaaacgggggagtatcaaggtgtatgccgagttatgtttgggttcaccgtctctttttacataagac |
31797283 |
T |
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| Q |
182 |
atacaagtagttttgacatatcctttgaaatattct |
217 |
Q |
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| T |
31797284 |
gtacaagtagttttgacaactcctttgaaatattct |
31797319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 89 - 217
Target Start/End: Original strand, 31791048 - 31791175
Alignment:
| Q |
89 |
catttgtcatggcatgtttcaatcctgaaacgggggagtatcaaagtgtatgccgagttatctttgggttcaccgtctctttttacataagacatacaag |
188 |
Q |
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| T |
31791048 |
catttctcatggcatgtttcaatcctgaaactgaagagtatcaaagtgtgtgccgagtaatgtctgggttcacagactctttttacat-tgaggtacaag |
31791146 |
T |
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| Q |
189 |
tagttttgacatatcctttgaaatattct |
217 |
Q |
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| T |
31791147 |
tagttttgacatatcctttgaaatattct |
31791175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 31797089 - 31797155
Alignment:
| Q |
19 |
actgtttacaagttactgggttttcctttctgcctaagacgaaagtgtatgcatctggtcacaaatt |
85 |
Q |
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| T |
31797089 |
actgtttacaagttactgggttttcctttctgcctaagacgaaagtgtatgcatctggtcacaaatt |
31797155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 31789825 - 31789883
Alignment:
| Q |
19 |
actgtttacaagttactgggttttcctttctgcctaagacgaaagtgtatgcatctggt |
77 |
Q |
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| T |
31789825 |
actgtttgcaggttactgggtttccctctccgcctaagacgaaagtgtatgcatctggt |
31789883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 31804266 - 31804302
Alignment:
| Q |
49 |
tgcctaagacgaaagtgtatgcatctggtcacaaatt |
85 |
Q |
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| T |
31804266 |
tgcctaagaagaaagtgtatgcatctggtcaccaatt |
31804302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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