View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_low_68 (Length: 219)
Name: NF20296_low_68
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_low_68 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 46927311 - 46927111
Alignment:
| Q |
1 |
tcatcactgaaaatggctcttctactagacaactgtgaaggcattttactctccttagactcacacaaatcagtcccagctccattcctcaccaaaacat |
100 |
Q |
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| T |
46927311 |
tcatcactgaaaatggctcttctactagacaactgtgaaggcattttactctcattagactcacacaaatcagtcccagctccattcctcaccaaaacat |
46927212 |
T |
|
| Q |
101 |
accaacttgttgatgatccagccacagatcacatcgtttcttggggtgaagatgactccaccttcgttgtttggcgtcctcctgaatttgctagagacct |
200 |
Q |
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| T |
46927211 |
accaacttgttgatgatccagccacagatcacatcgtttcttggggtgaagatgactccaccttcgttgtttggcgtcctcctgaatttgctagagacct |
46927112 |
T |
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| Q |
201 |
c |
201 |
Q |
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| T |
46927111 |
c |
46927111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 197
Target Start/End: Complemental strand, 38752261 - 38752131
Alignment:
| Q |
67 |
aaatcagtcccagctccattcctcaccaaaacataccaacttgttgatgatccagccacagatcacatcgtttcttggggtgaagatgactccaccttcg |
166 |
Q |
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|||||||| || ||||| ||| | || || ||||||||||||||||||||||| ||| || ||||| || |||||| |||| ||||| | || || | |
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| T |
38752261 |
aaatcagtgcctgctcctttcttgacaaagacataccaacttgttgatgatcctctcactgaccacattgtatcttggagtgatgatgaaactacatttg |
38752162 |
T |
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| Q |
167 |
ttgtttggcgtcctcctgaatttgctagaga |
197 |
Q |
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| T |
38752161 |
ttgtttggaggcctcctgagtttgctagaga |
38752131 |
T |
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