View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_low_69 (Length: 218)
Name: NF20296_low_69
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_low_69 |
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Alignment Details
Target: chr7 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 17 - 159
Target Start/End: Complemental strand, 17495061 - 17494921
Alignment:
| Q |
17 |
aatatggacaaattaagccacagaaaatcctccacttagtacaaaataaatagatagagagaatattaaaatgtcattaatt-tttgtttttggtatatt |
115 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || | ||||||| |
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| T |
17495061 |
aatatggacaaattaagccacagaaactcctccacttagtacaaaataaatagatagagagaatattaaaatgtcattaattattttttggtagtatatt |
17494962 |
T |
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| Q |
116 |
aaaatgtcatcattatatctgcatggataagataaactccttcc |
159 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |
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| T |
17494961 |
aaaatg---tcattatatctgcatggataagataaactccttcc |
17494921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 17558153 - 17558293
Alignment:
| Q |
17 |
aatatggacaaattaagccacagaaaatcctccacttagtacaaaataaatagatagagagaatattaaaatgtcattaatt-tttgtttttggtatatt |
115 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || | ||||||| |
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| T |
17558153 |
aatatggacaaattaagccacagaaactcctccacttagtacaaaataaatagatagagagaatattaaaatgtcattaattattttttggtagtatatt |
17558252 |
T |
|
| Q |
116 |
aaaatgtcatcattatatctgcatggataagataaactccttcc |
159 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |
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| T |
17558253 |
aaaatg---tcattatatctgcatggataagataaactccttcc |
17558293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 1922273 - 1922198
Alignment:
| Q |
82 |
ttaaaatgtcattaatttttgtttt-tggtatattaaaatgtcatcattatatctgcatggataagataaactccttcc |
159 |
Q |
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|||||||||||||||||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1922273 |
ttaaaatgtcattaatttttttttggtagtatattaaaatgtcat---tatatctgcatggataagataaactccttcc |
1922198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 1922309 - 1922275
Alignment:
| Q |
17 |
aatatggacaaattaagccacagaaaatcctccac |
51 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
1922309 |
aatatggacaaattaagccacagaaaatcctccac |
1922275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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