View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20296_low_7 (Length: 565)

Name: NF20296_low_7
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20296_low_7
NF20296_low_7
[»] chr8 (4 HSPs)
chr8 (141-548)||(35594158-35594565)
chr8 (399-548)||(35568251-35568400)
chr8 (399-548)||(35582982-35583131)
chr8 (60-123)||(34615500-34615563)
[»] chr4 (6 HSPs)
chr4 (29-125)||(6842243-6842339)
chr4 (33-126)||(52462349-52462442)
chr4 (89-125)||(46854312-46854348)
chr4 (29-123)||(29322215-29322310)
chr4 (69-123)||(16491292-16491346)
chr4 (29-81)||(46854340-46854391)
[»] scaffold0373 (1 HSPs)
scaffold0373 (29-125)||(3861-3957)
[»] chr2 (1 HSPs)
chr2 (29-125)||(6149523-6149619)
[»] chr3 (1 HSPs)
chr3 (29-123)||(46224714-46224808)
[»] chr1 (2 HSPs)
chr1 (29-123)||(22667885-22667979)
chr1 (479-536)||(26859934-26859991)
[»] chr6 (1 HSPs)
chr6 (60-123)||(34376867-34376930)


Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 141 - 548
Target Start/End: Complemental strand, 35594565 - 35594158
Alignment:
Q  141 ttataaaaagtaagcttgagcgattttataaatgcaagccaaatcccatggttgatgtgtacacaaaactgacaacacgtggacttttcgttcgcactgt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35594565 ttataaaaagtaagcttgagcgattttataaatgcaagccaaatcccatggttgatgtgtacacaaaactgacaacacgtggacttttcgttcgcactgt 35594466  T
Q  241 agttgataaaattgagcctcatgtttcatttcataccttgcataataacnnnnnnncctgagcctctagtttcattatctctgagctaaatcatctaaca 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||| |||||||||||||||||    
T  35594465 agttgataaaattgagcctcatgtttcatttcataccttgcataataacaaaaaaacctgagcctctagtttcattatctctaagctaaatcatctaaca 35594366  T
Q  341 ttgaagtgtttccactttcttctcttgttccattactctgcagaaagggaacaatggaagctttttctgttagttcacttcacataccaatagcacttga 440  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35594365 ttgaagtgtttccactttcttctcttgttccattactctgcagaaagggaacaatggaagctttttctgttagttcacttcacataccaatagcacttga 35594266  T
Q  441 accacaaatcccattnnnnnnntatatgttcttcaactcacaagtgcattcaacacttccattaattcgtgggaacgcttcaaaattcaagcttttcacc 540  Q
    |||||||||||||||       | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  35594265 accacaaatcccattaaaaaaatctatgttcttcaactcacaagtgcattcaacacttccattaattcgtgggaacgcttcaaaattcaagcttttcact 35594166  T
Q  541 gccttatc 548  Q
    ||||||||    
T  35594165 gccttatc 35594158  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 548
Target Start/End: Complemental strand, 35568400 - 35568251
Alignment:
Q  399 agctttttctgttagttcacttcacataccaatagcacttgaaccacaaatcccattnnnnnnntatatgttcttcaactcacaagtgcattcaacactt 498  Q
    |||||||||| || ||||||||||||| |||||||||| | || |||||| ||||||       |  |||||||| || |||||| | ||||||||||||    
T  35568400 agctttttctctttgttcacttcacatcccaatagcacataaaacacaaaccccattaaaaaaatccatgttcttgaagtcacaaatccattcaacactt 35568301  T
Q  499 ccattaattcgtgggaacgcttcaaaattcaagcttttcaccgccttatc 548  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  35568300 ccattaattcgtgggaacacttcaaaattcaagcttttcactgccttatc 35568251  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 548
Target Start/End: Complemental strand, 35583131 - 35582982
Alignment:
Q  399 agctttttctgttagttcacttcacataccaatagcacttgaaccacaaatcccattnnnnnnntatatgttcttcaactcacaagtgcattcaacactt 498  Q
    |||||||||| || ||||||||||||| |||||||||| | || |||||| ||||||       |  |||||||| || |||||| | ||||||||||||    
T  35583131 agctttttctcttcgttcacttcacatcccaatagcacataaaacacaaaccccattaaaaaaatccatgttcttgaagtcacaaatccattcaacactt 35583032  T
Q  499 ccattaattcgtgggaacgcttcaaaattcaagcttttcaccgccttatc 548  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  35583031 ccattaattcgtgggaacacttcaaaattcaagcttttcactgccttatc 35582982  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 34615563 - 34615500
Alignment:
Q  60 gtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaaca 123  Q
    |||||||| ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||    
T  34615563 gtggaaagggcatcattccactctctttccattccacccatctttctttccttggaaccaaaca 34615500  T

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Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 6842339 - 6842243
Alignment:
Q  29 tttccttagctttatgaaggtgtgttaaatagtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaacata 125  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6842339 tttccttagctttatgaaggtgtgtcaaacagtggaaagagcatcattccactctctttccattccactcctctttctttccttggaaccaaacata 6842243  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 52462349 - 52462442
Alignment:
Q  33 cttagctttatgaaggtgtgttaaatagtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaacatat 126  Q
    |||||||||||||||||||   ||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  52462349 cttagctttatgaaggtgtaccaaacagtagaaagagcatcattccactctctttccattccactcctctttctttcgttggaaccaaacatat 52462442  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 46854348 - 46854312
Alignment:
Q  89 cattccactcctctttctttccttggaaccaaacata 125  Q
    |||||||||||||||||||||||||||||||||||||    
T  46854348 cattccactcctctttctttccttggaaccaaacata 46854312  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 29322310 - 29322215
Alignment:
Q  29 tttccttagcttta-tgaaggtgtgttaaatagtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaaca 123  Q
    |||||||||||||  ||||||||||| |||   |||||||  |||||||||||| |||||||  |||||||  |||||||||| ||||| ||||||    
T  29322310 tttccttagcttttgtgaaggtgtgtcaaactatggaaaggacatcattccactctctttcccatccactcacctttctttccatggaatcaaaca 29322215  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 16491346 - 16491292
Alignment:
Q  69 gcatcattccactttctttccattccactcctctttctttccttggaaccaaaca 123  Q
    ||||||||||||| ||||| ||| || ||| ||||||||||| ||||||||||||    
T  16491346 gcatcattccactctcttttcatccccctcatctttctttccatggaaccaaaca 16491292  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 46854391 - 46854340
Alignment:
Q  29 tttccttagctttatgaaggtgtgttaaatagtggaaagagcatcattccact 81  Q
    |||||||||||| |||||||||||  ||| ||| |||||||||||||||||||    
T  46854391 tttccttagctt-atgaaggtgtgccaaacagtagaaagagcatcattccact 46854340  T

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Target: scaffold0373 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 29 - 125
Target Start/End: Original strand, 3861 - 3957
Alignment:
Q  29 tttccttagctttatgaaggtgtgttaaatagtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaacata 125  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3861 tttccttaactttatgaaggtgtgtcaaacagtggaaagagcatcattccactctctttccattccactcctctttctttccttggaaccaaacata 3957  T

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Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 6149619 - 6149523
Alignment:
Q  29 tttccttagctttatgaaggtgtgttaaatagtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaacata 125  Q
    |||||||| |||||||||||||||  ||| ||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6149619 tttccttaactttatgaaggtgtgccaaacagtggaaagaatatcattccactctctttccattccactcctctttctttccttggaaccaaacata 6149523  T

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Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 46224714 - 46224808
Alignment:
Q  29 tttccttagctttatgaaggtgtgttaaatagtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaaca 123  Q
    ||||||||||||| |||||||||   |||  |||||||| ||||||||||||| ||||| |||||||| | ||||||||||||||||||||||||    
T  46224714 tttccttagctttgtgaaggtgttccaaacggtggaaagggcatcattccactctcttttcattccacccatctttctttccttggaaccaaaca 46224808  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 22667979 - 22667885
Alignment:
Q  29 tttccttagctttatgaaggtgtgttaaatagtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaaca 123  Q
    ||||| ||||||| |||||||||   |||  |||||||| ||||||||||||| |||||||||||||  | ||||||||||||||||||||||||    
T  22667979 tttccatagctttgtgaaggtgttccaaacggtggaaagggcatcattccactctctttccattccatccatctttctttccttggaaccaaaca 22667885  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 479 - 536
Target Start/End: Original strand, 26859934 - 26859991
Alignment:
Q  479 cacaagtgcattcaacacttccattaattcgtgggaacgcttcaaaattcaagctttt 536  Q
    ||||| |||||||| ||| ||||||||||||||||||| |||||||||| ||||||||    
T  26859934 cacaattgcattcatcacatccattaattcgtgggaacacttcaaaatttaagctttt 26859991  T

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Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 34376930 - 34376867
Alignment:
Q  60 gtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaaca 123  Q
    |||||||| ||||||||||||| |||||||||||||  | ||||||||||||||||||||||||    
T  34376930 gtggaaagggcatcattccactctctttccattccatccatctttctttccttggaaccaaaca 34376867  T

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