View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20296_low_8 (Length: 563)

Name: NF20296_low_8
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20296_low_8
NF20296_low_8
[»] chr4 (6 HSPs)
chr4 (22-552)||(28787960-28788483)
chr4 (454-552)||(24856237-24856335)
chr4 (454-549)||(24853349-24853444)
chr4 (418-552)||(51246622-51246749)
chr4 (454-542)||(28787018-28787106)
chr4 (418-552)||(17525460-17525589)
[»] scaffold0406 (1 HSPs)
scaffold0406 (454-552)||(6280-6378)
[»] chr7 (1 HSPs)
chr7 (454-552)||(22622375-22622473)
[»] chr5 (5 HSPs)
chr5 (473-552)||(5046448-5046527)
chr5 (473-552)||(5047219-5047298)
chr5 (473-552)||(5047990-5048069)
chr5 (454-511)||(5664821-5664877)
chr5 (485-545)||(5663780-5663840)
[»] chr8 (1 HSPs)
chr8 (454-544)||(1275201-1275291)
[»] chr2 (2 HSPs)
chr2 (418-552)||(20978804-20978940)
chr2 (458-546)||(33798848-33798936)
[»] chr3 (3 HSPs)
chr3 (473-552)||(12738191-12738270)
chr3 (473-552)||(12739342-12739421)
chr3 (508-552)||(15023059-15023103)
[»] chr1 (4 HSPs)
chr1 (454-552)||(22055466-22055563)
chr1 (452-552)||(29371903-29372004)
chr1 (480-552)||(22056567-22056638)
chr1 (418-450)||(22056518-22056550)
[»] scaffold0272 (1 HSPs)
scaffold0272 (454-493)||(3559-3598)


Alignment Details
Target: chr4 (Bit Score: 457; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 22 - 552
Target Start/End: Complemental strand, 28788483 - 28787960
Alignment:
Q  22 gagatgacattgacccactacttctgatttctgcacgtaaaatacaatcacttaataataatgaaatacttaggagtttgcttcaacttaggatgacaca 121  Q
    |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28788483 gagatgacattgacccactacttctgatttctgcacgtaaa---caatcacttaataataatgaaatacttaggagtttgcttcaacttaggatgacaca 28788387  T
Q  122 cgatgatgattgagtaataagattgaaatgaaatttttcacttaaatttcaaagtagcagtacaatttaaggtatacaatatgtcaatatctatctctgg 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28788386 cgatgatgattgagtaataagattgaaatgaaatttttcacttaaatttcaaagtagcagtacaatttaaggtatacaatatgttaatatctatctctgg 28788287  T
Q  222 taacaaccagttttatggaaagcagcaagtacatacaagaaataaatagaagaaaacaagctgcatagtagacttctgttggnnnnnnnntaaaatatat 321  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         || ||||||    
T  28788286 taacaacgagttttatggaaagcaacaagtacatacaagaaataaatagaagaaaacaagctgcatagtagacttctgttggaaaaa----aatatatat 28788191  T
Q  322 atagcctagggagctgtagtggtggagaggatagcttagggagctgtagtggtggagagaatagtagtaaggataagagtacacacattagaaattagga 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28788190 atagcctagggagctgtagtggtggagaggatagcttagggagctgtagtggtggagagaatagtagtaaggataagaggacacacattagaaattagga 28788091  T
Q  422 gagaatatcatatggtgaagccttcaatattaaatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgt 521  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28788090 gagaatatcatgtggtgaagccttcaatattaaatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgt 28787991  T
Q  522 ttgaaaatgtttctagaactagaataatcta 552  Q
    ||||| |||||||||||||||||||||||||    
T  28787990 ttgaagatgtttctagaactagaataatcta 28787960  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 454 - 552
Target Start/End: Complemental strand, 24856335 - 24856237
Alignment:
Q  454 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 552  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||  ||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  24856335 aatattattgacattgcatcttaaaggctggaatacaattgcatcctaataagtctatttataggtgttagaaaatgtttctagaactagaataatcta 24856237  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 454 - 549
Target Start/End: Complemental strand, 24853444 - 24853349
Alignment:
Q  454 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataat 549  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| ||| |||||| |||||||||||||||    
T  24853444 aatattattgacattgcatcttaaaggcttgaatacaattgcatccaaataagtctatttataggtgttagaagatgtttttagaactagaataat 24853349  T

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Target: chr4; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 418 - 552
Target Start/End: Complemental strand, 51246749 - 51246622
Alignment:
Q  418 aggagagaatatcatatggtgaagccttcaatattaaatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttatag 517  Q
    |||||||||||| || ||||||||||||||||||||       |||||||| ||||  ||||||||||||||||||||||||||||| ||||| ||||||    
T  51246749 aggagagaatatgatttggtgaagccttcaatatta-------ttgacattacatcccaaaggcttgaatacaattgcacccatataagtctacttatag 51246657  T
Q  518 gtgtttgaaaatgtttctagaactagaataatcta 552  Q
    ||| ||| | |||||||||||||||||||||||||    
T  51246656 gtgcttgtagatgtttctagaactagaataatcta 51246622  T

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Target: chr4; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 454 - 542
Target Start/End: Complemental strand, 28787106 - 28787018
Alignment:
Q  454 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaacta 542  Q
    ||||||||  ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||    
T  28787106 aatattatatacattgcatctaaaaggcttgaatacaattgcaccaatatatgtctatttataggtgcttgaagatgtttctagaacta 28787018  T

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Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 418 - 552
Target Start/End: Original strand, 17525460 - 17525589
Alignment:
Q  418 aggagagaatatcatatggtgaagccttcaatattaaatattattgaca--ttgcatcttaaaggcttgaatacaattgcacccatatatgtctatttat 515  Q
    |||||||||||| |||||||||||||||||||||||       ||||||  |||||||| |||||||||||||||||| ||| |||||| ||||||||||    
T  17525460 aggagagaatatgatatggtgaagccttcaatatta-------ttgacacattgcatctcaaaggcttgaatacaatttcacacatataagtctatttat 17525552  T
Q  516 aggtgtttgaaaatgtttctagaactagaataatcta 552  Q
    | | | ||| | |||||||||||||||||||||||||    
T  17525553 aagcgcttgtagatgtttctagaactagaataatcta 17525589  T

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Target: scaffold0406 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 454 - 552
Target Start/End: Complemental strand, 6378 - 6280
Alignment:
Q  454 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 552  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||| |||||  ||||||||||||||||||||||||    
T  6378 aatattattgacattgcatctcaaaggcttgaatacaatttcacccatataagtctatttataggtgcttgaagctgtttctagaactagaataatcta 6280  T

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Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 454 - 552
Target Start/End: Original strand, 22622375 - 22622473
Alignment:
Q  454 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 552  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||||| |||  |||| |||||||||||| ||||||||||||    
T  22622375 aatattattgacatggcatctcaaaggcttgaatacaattgcacccatataagcctatttataagtgcctgaagatgtttctagaattagaataatcta 22622473  T

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Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 473 - 552
Target Start/End: Complemental strand, 5046527 - 5046448
Alignment:
Q  473 cttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 552  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| |||||||||||||||    
T  5046527 cttaaaggcttgaatacaattgcactcatataagtctatttataggtgcttgtagatgtttctaaaactagaataatcta 5046448  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 473 - 552
Target Start/End: Complemental strand, 5047298 - 5047219
Alignment:
Q  473 cttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 552  Q
    ||||||||||||||||||||||||| |||||| || |||||||||||| ||| | ||||||||| |||||||||||||||    
T  5047298 cttaaaggcttgaatacaattgcactcatataagtatatttataggtgcttgtagatgtttctaaaactagaataatcta 5047219  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 473 - 552
Target Start/End: Complemental strand, 5048069 - 5047990
Alignment:
Q  473 cttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 552  Q
    ||||||||||||||||||||||||| |||||| || |||||||||||| ||| | |||||| || |||||||||||||||    
T  5048069 cttaaaggcttgaatacaattgcactcatataagtatatttataggtgcttgtagatgtttttaaaactagaataatcta 5047990  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 454 - 511
Target Start/End: Original strand, 5664821 - 5664877
Alignment:
Q  454 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctat 511  Q
    |||||||||| ||||| || ||||| ||||||||||||||||||||||||| ||||||    
T  5664821 aatattattgtcattgtat-ttaaaagcttgaatacaattgcacccatataagtctat 5664877  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 545
Target Start/End: Original strand, 5663780 - 5663840
Alignment:
Q  485 aatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaa 545  Q
    |||||||| |||||||||||  |||||||||| ||| ||||| ||||||||| ||||||||    
T  5663780 aatacaatcgcacccatataattctatttataagtgattgaagatgtttctaaaactagaa 5663840  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 454 - 544
Target Start/End: Original strand, 1275201 - 1275291
Alignment:
Q  454 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactaga 544  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||  | || ||||||||| |||||  ||||||||||||||||    
T  1275201 aatattattgacattgcatcttaaacgtttgaatacaattgcacccatatacctatacttataggtgcttgaaggtgtttctagaactaga 1275291  T

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Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 418 - 552
Target Start/End: Original strand, 20978804 - 20978940
Alignment:
Q  418 aggagagaatatcatatggtgaagccttcaatattaaatattattgacattgcatct--------taaaggcttgaatacaattgcacccatatatgtct 509  Q
    |||||||||||| |||||||||||||||||||||||       ||||||||||||||        |||||||||||||| ||| ||||||||||| || |    
T  20978804 aggagagaatatgatatggtgaagccttcaatatta-------ttgacattgcatctcaaaggtttaaaggcttgaatataatggcacccatataagttt 20978896  T
Q  510 atttataggt-gtttgaaaatgtttctagaactagaataatcta 552  Q
    ||||||||||  |||| | |||||||||||||||||||||||||    
T  20978897 atttataggtactttgtagatgtttctagaactagaataatcta 20978940  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 546
Target Start/End: Original strand, 33798848 - 33798936
Alignment:
Q  458 ttattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaat 546  Q
    |||||||| || ||||| ||||||||||||||||||||||  ||   | ||||||||||| |  ||||| |||||||||||| ||||||    
T  33798848 ttattgacgttacatctcaaaggcttgaatacaattgcacatatgcttatctatttatagatccttgaagatgtttctagaagtagaat 33798936  T

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Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 473 - 552
Target Start/End: Complemental strand, 12738270 - 12738191
Alignment:
Q  473 cttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 552  Q
    |||||||||||||||||||||||||||| ||| || |||||||||||| ||| | ||||||||||||||| ||| |||||    
T  12738270 cttaaaggcttgaatacaattgcacccaaataagtttatttataggtgcttgtagatgtttctagaactaaaattatcta 12738191  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 473 - 552
Target Start/End: Complemental strand, 12739421 - 12739342
Alignment:
Q  473 cttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 552  Q
    |||||||||||||||||||||||| ||| |||  ||||||||||| || ||| | ||||||||||||||| |||||||||    
T  12739421 cttaaaggcttgaatacaattgcatccaaataattctatttatagatgcttgtagatgtttctagaactaaaataatcta 12739342  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 508 - 552
Target Start/End: Complemental strand, 15023103 - 15023059
Alignment:
Q  508 ctatttataggtgtttgaaaatgtttctagaactagaataatcta 552  Q
    ||||||||||||| ||| | ||||||||||||||| |||||||||    
T  15023103 ctatttataggtgcttgtagatgtttctagaactaaaataatcta 15023059  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 454 - 552
Target Start/End: Original strand, 22055466 - 22055563
Alignment:
Q  454 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 552  Q
    |||||||| |||||||||||| |||||||||| ||||||||||||  |  | ||||||||||| ||| ||||| ||| ||||||||||| |||||||||    
T  22055466 aatattatcgacattgcatctgaaaggcttgactacaattgcaccattcca-gtctatttataagtgcttgaagatgattctagaactaaaataatcta 22055563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 452 - 552
Target Start/End: Complemental strand, 29372004 - 29371903
Alignment:
Q  452 taaatattattgacattgcatcttaaaggcttgaatacaatt-gcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatc 550  Q
    ||||| || |||| |||| |||||||||||||  |||||||| |||||||||||  |||||||||| ||| ||||| |||||| ||  ||| ||||||||    
T  29372004 taaatgttcttgatattgtatcttaaaggcttacatacaatttgcacccatataaatctatttataagtgcttgaagatgtttataatacttgaataatc 29371905  T
Q  551 ta 552  Q
    ||    
T  29371904 ta 29371903  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 480 - 552
Target Start/End: Original strand, 22056567 - 22056638
Alignment:
Q  480 gcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 552  Q
    |||||||| ||||||||||  | || |||| |||||||||| ||||| || ||||||||||||||||||||||    
T  22056567 gcttgaatgcaattgcaccttt-taagtctctttataggtgcttgaagatatttctagaactagaataatcta 22056638  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 450
Target Start/End: Original strand, 22056518 - 22056550
Alignment:
Q  418 aggagagaatatcatatggtgaagccttcaata 450  Q
    |||||||||||| ||||||||||||||||||||    
T  22056518 aggagagaatataatatggtgaagccttcaata 22056550  T

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Target: scaffold0272 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 493
Target Start/End: Original strand, 3559 - 3598
Alignment:
Q  454 aatattattgacattgcatcttaaaggcttgaatacaatt 493  Q
    ||||||||||||||||||||| ||||| ||||||||||||    
T  3559 aatattattgacattgcatctcaaaggtttgaatacaatt 3598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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