View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_low_9 (Length: 544)
Name: NF20296_low_9
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 19 - 525
Target Start/End: Original strand, 30575941 - 30576447
Alignment:
| Q |
19 |
gagcaatcgagtgaaaaatatacctgaaattcatataaatgttgagcaaaaacaactaccaattccaagagcagaaagttcaaccacattgtacattttt |
118 |
Q |
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| T |
30575941 |
gagcaatcgagtgaaaaatatacctgaaattcataaaaatgttgagcaaaaacaactaccaattccaagagcagaaagttcaaccgcattgtacattttt |
30576040 |
T |
|
| Q |
119 |
gatagagtcatatgaaaggaaaaactttcccaaccacgacatacagatctggtccgaatctgtgcttgccgagaatgaatgactttgttgtcgtagtggt |
218 |
Q |
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| T |
30576041 |
gatagagccatatgaaaggaaaaactttcccaactgcgacatacagatctggtccgaatctgtgcttgccgagaatgaatgactttgttgtcgtagtggt |
30576140 |
T |
|
| Q |
219 |
tggtttcttccataatatcgacgggagataatacagaggaaggagaacaattatattgaagaaagaaccattgattaatggatcagcattacattaaatt |
318 |
Q |
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| T |
30576141 |
tggtttcttccataatatcgacgggagataatacagaggaaggagaacaattatattgaagaaagaaccattgattaatggatcagcattacattaaatt |
30576240 |
T |
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| Q |
319 |
tatatacaagagggatgaggaggactattacattgaagctatagtaatgaaaataacaattcaccaaactttgtaattggcaagaaccagaatcaagaat |
418 |
Q |
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| T |
30576241 |
tatatacaagatggatgaggaggactattacattgaagctatagtaatgaaaataacaattcagcaaactttgtaattggcaagaaccagaatcaagaat |
30576340 |
T |
|
| Q |
419 |
gtgtgaagtgtgaacaatattgttgtgtgaccttgttaggaaccaagaaattgaattgaataaaaagaacatttctgttaagaaaataggaaagagaact |
518 |
Q |
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| T |
30576341 |
gtgtgaagtgtgaacaatattgttgtgtgaccttgttaggaacgaagatattgaattgaataaaaagaacatttctgttaagaaaataggaaagagaact |
30576440 |
T |
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| Q |
519 |
ctcttcc |
525 |
Q |
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||||||| |
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| T |
30576441 |
ctcttcc |
30576447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 513
Target Start/End: Complemental strand, 21524287 - 21524226
Alignment:
| Q |
452 |
tgttaggaaccaagaaattgaattgaataaaaagaacatttctgttaagaaaataggaaaga |
513 |
Q |
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|||||||||||||||| ||| ||| |||| |||||||| | | |||||||||||||||||| |
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| T |
21524287 |
tgttaggaaccaagaatttgtattcaatagaaagaacacatttattaagaaaataggaaaga |
21524226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 513
Target Start/End: Complemental strand, 21534847 - 21534786
Alignment:
| Q |
452 |
tgttaggaaccaagaaattgaattgaataaaaagaacatttctgttaagaaaataggaaaga |
513 |
Q |
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| T |
21534847 |
tgttaggaaccaagaatttgtattcaatagaaagaacacatttattaagaaaataggaaaga |
21534786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 513
Target Start/End: Original strand, 20642045 - 20642106
Alignment:
| Q |
452 |
tgttaggaaccaagaaattgaattgaataaaaagaacatttctgttaagaaaataggaaaga |
513 |
Q |
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|||||||||||||||| ||| ||| |||| |||||| | || | |||||||||||||||||| |
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| T |
20642045 |
tgttaggaaccaagaatttgtattcaatagaaagaaaacttttattaagaaaataggaaaga |
20642106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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