View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20297_high_4 (Length: 360)
Name: NF20297_high_4
Description: NF20297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20297_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 15 - 343
Target Start/End: Complemental strand, 23596888 - 23596560
Alignment:
| Q |
15 |
aatatatagtggacctatgtgactctcctcaagccacacacctcaatcacaatggccaaacttttcttctcaaactcctttctcttatccctcatctcct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23596888 |
aatatatagtggacctatgtgactctcctcaagccacacacctcaatcacaatggccaaacttttcttctcaaactcctttctcttatccctcatctcct |
23596789 |
T |
|
| Q |
115 |
tcctcttcatcaccaccattaccacagcaaaaccccattctttcataaaaaccatctccccaacaaccctaggactccacaaacctcaaaaactaagcca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23596788 |
tcctcttcatcaccaccattaccacagcaaaaccccattctttcataaaaaccatctccccaacaaccctaggactccacaaacctcaaaaactaagcca |
23596689 |
T |
|
| Q |
215 |
catccgcttctacttccacgacatcatcggcggaaaaaaccaaactgctgtccgggtcgcctcatctccaaccactgaaaaatcccccacgggttttggt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23596688 |
catccgcttctacttccacgacatcatcggcggaaaaaaccaaaccgctgtccgggtcgcctcatctccaaccactgaaaaatcccccacgggttttggt |
23596589 |
T |
|
| Q |
315 |
tcagtggttatgatggacgacccgttaac |
343 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
23596588 |
tcagtggttatgatggacgacccgttaac |
23596560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University