View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20297_high_5 (Length: 346)
Name: NF20297_high_5
Description: NF20297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20297_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 7 - 331
Target Start/End: Complemental strand, 23997848 - 23997524
Alignment:
| Q |
7 |
agattattctgtgacaaattactgcaaaaatgtggtaacatgtgagacatggaaagtttccctatatggaaattatgctaatacacaacaccataaactt |
106 |
Q |
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| T |
23997848 |
agattattccgtgacaaattactgcaaaaatgtggtaacatgtgagacatggaaagtttccctatatggaaattatgctaatacacaacaccataaactt |
23997749 |
T |
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| Q |
107 |
acaggatgttcaaacgcggtaatcgtgctaaaaattctggcaggtccccggtcagttcattgtttgacaaatctctgtaaaataacaattattgttttag |
206 |
Q |
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| T |
23997748 |
acaggattttcaaacgcggtaattgtgctaaaaattctggcaggtccccggtcagttcattgtttgacaaatctctgtaaaataacaattattgttttag |
23997649 |
T |
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| Q |
207 |
tcttgacaattcagatcttcaaagaatctatattgttccagcatagggcttgaacaatgatattgaaacaagaagaagatacttacagaatctctaaatt |
306 |
Q |
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| T |
23997648 |
tcttgacaattcagatcttcaaagaatctatattgttccagcatagggcttgaacaatgatattgaaacaagaagaagatacttacagaatctctaaatt |
23997549 |
T |
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| Q |
307 |
tgtgagtttagagaatgcagcatct |
331 |
Q |
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| T |
23997548 |
tgtgagtttagagaatgcagcatct |
23997524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 7 - 331
Target Start/End: Original strand, 23966132 - 23966450
Alignment:
| Q |
7 |
agattattctgtgacaaattactgcaaaaatgtggtaacatgtgagacatggaaagtttccctatatggaaattatgctaatacacaacaccataaactt |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||| |||||||||||||||||||| |
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| T |
23966132 |
agattattctgtgacaaattactgcaaaaatgtggtaacatatgagacatggaaagttaccctatatggaaac---gctcatacacaacaccataaactt |
23966228 |
T |
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| Q |
107 |
acaggatgttcaaacgcggtaatcgtgctaaaaattctggcaggtccccggtcagttcattgtttgacaaatctctgtaaaataacaattattgttttag |
206 |
Q |
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||||||| |||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
23966229 |
acaggattttcagacgcggtaattgtgctaaaaattctggcaggcccccggtcagttcattgtttgacaaatctctgtaaaataataattattgttttag |
23966328 |
T |
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| Q |
207 |
tcttgacaattcagatcttcaaagaatctatattgttccagcatagggcttgaacaatgatattgaaacaagaagaagatacttacagaatctctaaatt |
306 |
Q |
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||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
23966329 |
tcttgacaattcagatcatcacagcatctatattgttccagcatagggcttgaacaatgatattga---aaggagaagatacttacagaatctctaaatt |
23966425 |
T |
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| Q |
307 |
tgtgagtttagagaatgcagcatct |
331 |
Q |
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||||||||||||||||||||||||| |
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| T |
23966426 |
tgtgagtttagagaatgcagcatct |
23966450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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