View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20297_low_2 (Length: 394)
Name: NF20297_low_2
Description: NF20297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20297_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 31642001 - 31641618
Alignment:
| Q |
1 |
tgtttattatcctccattttcttcaattcataatcctcttgaaactgattcagatacctttatatttaagcacaaatgagggttgtgagaatctgtttaa |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
31642001 |
tgtttattatcctccattttcttcagttcataatccttttgaaactgattcagatacctttatgtttgagcacaaatgaaggttgtgagaatctgtttaa |
31641902 |
T |
|
| Q |
101 |
ttgtggaactataaaaccaattggttttcctttctggggaggggatcgaccaaaagagtgtgggcaccctttgttgaatctcacttgtataaacaacatc |
200 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||| | |||||| | | |
|
|
| T |
31641901 |
ttgtggaaatataaaacaaattggttttcctttctggggagaggatcgaccaaaagagtgtggccaccctttgttgaatctcaattgcacaaacaatacc |
31641802 |
T |
|
| Q |
201 |
agctacataacaatcaatgaagtcaagtatcatgttttagaagccaaccctgatgaacatactttgagaatcaccaaagaggactatttgcaaggactat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31641801 |
agctacataacaatcaatgaagtcaagtataatgttttagaagccaaacctgatgaacatactttgagaatcaccaaagaggactatttgcaaggactat |
31641702 |
T |
|
| Q |
301 |
gtccaacaaaacttgtcaacacaacattagaccctgacctctttgtttatggtcctgactacaataatcttacactctcctatg |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31641701 |
gtccaacaaaacttgtcaacacaacattagaccccgacctctttgtttatggtcctgactacaataatcttacactcttctatg |
31641618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 8 - 384
Target Start/End: Complemental strand, 31583388 - 31583012
Alignment:
| Q |
8 |
tatcctccattttcttcaattcataatcctcttgaaactgattcagatacctttatatttaagcacaaatgagggttgtgagaatctgtttaattgtgga |
107 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31583388 |
tatcctccattttcttcagttcataatccttttgaaactgattcagatacctttatgtttgagcacaaatgaaggttgtgagaatctgtttaattgtgga |
31583289 |
T |
|
| Q |
108 |
actataaaaccaattggttttcctttctggggaggggatcgaccaaaagagtgtgggcaccctttgttgaatctcacttgtataaacaacatcagctaca |
207 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||| | |||||| | |||||||| |
|
|
| T |
31583288 |
aatataaaacaaattggttttcctttctggggagaggatcgaccaaaagagtgtggccaccctttgttgaatctcaattgcacaaacaataccagctaca |
31583189 |
T |
|
| Q |
208 |
taacaatcaatgaagtcaagtatcatgttttagaagccaaccctgatgaacatactttgagaatcaccaaagaggactatttgcaaggactatgtccaac |
307 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31583188 |
taacaatcaatgaagtcaagtataatgttttagaagccaaacctgatgaacatactttgagaatcaccaaagaggactatttgcaaggactatgtccaac |
31583089 |
T |
|
| Q |
308 |
aaaacttgtcaacacaacattagaccctgacctctttgtttatggtcctgactacaataatcttacactctcctatg |
384 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31583088 |
aaaacttgtcaacacaacattagaccccgacctctttgtttatggtcctgactacaataatcttacactcttctatg |
31583012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University