View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20297_low_3 (Length: 365)
Name: NF20297_low_3
Description: NF20297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20297_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 7e-71; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 191 - 351
Target Start/End: Complemental strand, 354768 - 354608
Alignment:
| Q |
191 |
ctgtacttcatcgaaaccaaattaaactgtgtatttgtctaannnnnnnagtcaagggattaacataagttagaatcagagttcaccatgaaagatcatt |
290 |
Q |
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| T |
354768 |
ctgtacttcatcgaaaccaaattaaactgtgtatttgtctaatttttttagtcaagggattaacataagttagaatcagagttcaccatgaaagatcatt |
354669 |
T |
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| Q |
291 |
tcattagattacaatgataacaattgtacggaacactcacatgctacaaatacaaagaaac |
351 |
Q |
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| T |
354668 |
tcattagattacaatgataacaattgtatggaacactcacatgctacaaatacaaagaaac |
354608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 354949 - 354845
Alignment:
| Q |
10 |
caaaggtacggattttagtcgattcatcgatttccaaaggaacacctgtgcatccacgacgttaaaataacaaaactactaaaaatcaagttaacaaaca |
109 |
Q |
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| T |
354949 |
caaaggtacggattttagtcgattcatcgatttccaaaggaacacctgtgcatccacgacgttaaaataacaaaactactaaaaatcaagttaacaaaca |
354850 |
T |
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| Q |
110 |
ctcac |
114 |
Q |
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| T |
354849 |
ctcac |
354845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 10581348 - 10581244
Alignment:
| Q |
10 |
caaaggtacggattttagtcgattcatcgatttccaaaggaacacctgtgcatccacgacgttaaaataacaaaactactaaaaatcaagttaacaaaca |
109 |
Q |
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| T |
10581348 |
caaagatatggattttagtggattcatcaatttccaaaggaacacctgcgcatccactaagttaaaataacaaaactaaaaaaaatcaagttaacaaaca |
10581249 |
T |
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| Q |
110 |
ctcac |
114 |
Q |
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||||| |
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| T |
10581248 |
ctcac |
10581244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 10581116 - 10581051
Alignment:
| Q |
240 |
agtcaagggattaacataagttagaatcagagttcaccatgaaagatcatttcattagattacaat |
305 |
Q |
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| T |
10581116 |
agtcaagggattaacataagttagaatcagaattcaccatgaaagatcatttcattatattacaat |
10581051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 10581030 - 10580985
Alignment:
| Q |
306 |
gataacaattgtacggaacactcacatgctacaaatacaaagaaac |
351 |
Q |
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| T |
10581030 |
gataacaattatacggaacactcacatgtttcaaatacacagaaac |
10580985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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