View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20297_low_6 (Length: 283)
Name: NF20297_low_6
Description: NF20297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20297_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 40283582 - 40283407
Alignment:
| Q |
12 |
catcatcattcatacaatacctcaaagtccccaacaactcatcaaggcatagcaaaccaggacaagactaagtatatgaggcaattaaatacaagaccac |
111 |
Q |
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| T |
40283582 |
catcatcattcatacaatacctcaaagtccccaacaactcatcaaggcatagcaaaccaggacaagactaagtatatgaggcaattaaatacaagaccac |
40283483 |
T |
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| Q |
112 |
agcctttgtagcatcattcactcaccacaaaactaaacaagaatatgacatcaatcactttgccaaaaaaggagct |
187 |
Q |
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| T |
40283482 |
tgctcttgtagcatcattcactcatagcaaaactaaataagaaaatcacattaattacttcgccaaaaaaggagct |
40283407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 40283406 - 40283360
Alignment:
| Q |
214 |
aacgattccctcttaacatttcagttctgcacttcaccatacaatag |
260 |
Q |
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| T |
40283406 |
aacgattccctcttaatgcttcagtcctgcacttcaccatacaatag |
40283360 |
T |
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