View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20297_low_7 (Length: 222)

Name: NF20297_low_7
Description: NF20297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20297_low_7
NF20297_low_7
[»] chr7 (1 HSPs)
chr7 (1-222)||(1338225-1338445)
[»] chr6 (3 HSPs)
chr6 (1-222)||(31940038-31940258)
chr6 (89-186)||(13536362-13536459)
chr6 (1-49)||(13536272-13536320)
[»] chr5 (1 HSPs)
chr5 (1-222)||(9390391-9390610)
[»] chr4 (1 HSPs)
chr4 (69-222)||(5640178-5640331)


Alignment Details
Target: chr7 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1338225 - 1338445
Alignment:
Q  1 ttagaggaggtcccgcgaacaaatgtcatcgcataatctggaacctatgtgnnnnnnngaaggttgtggtcaacaaagaactaatttcaaaataaacatg 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||| ||| |||||||||||  ||    
T  1338225 ttagaggaggtcccgcgaacaaatgtcatagcataatctggaacctatgtggaaaaaa-aaggttgtggtcaacaaagaaataacttcaaaataaatgtg 1338323  T
Q  101 tccctaagacaagacaagattagtaccagaggcttcccagattttagatacactctttctacagaggggtcccattccactttattttctttcacaagga 200  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||  | ||| |||||||||||||| ||||||||||| ||||| |    
T  1338324 tccctaagacaagacaggattagtaccaagggcttcccagattttagatacactcttttaaaagacgggtcccattccaccttattttctttaacaagaa 1338423  T
Q  201 ctcccttgaggtccctgaagtt 222  Q
    | ||||||||||||||||||||    
T  1338424 cacccttgaggtccctgaagtt 1338445  T

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Target: chr6 (Bit Score: 129; Significance: 6e-67; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 31940038 - 31940258
Alignment:
Q  1 ttagaggaggtcccgcgaacaaatgtcatcgcataatctggaacctatgtgnnnnnnngaaggttgtggtcaacaaagaactaatttcaaaataaacatg 100  Q
    ||||| |||||||| |||||||||||||| |||||||||||||||| ||||        |||  |||||||||||||||||||| |||||||||||  ||    
T  31940038 ttagaagaggtcccacgaacaaatgtcattgcataatctggaacctgtgtggaaaaaa-aagtgtgtggtcaacaaagaactaacttcaaaataaatgtg 31940136  T
Q  101 tccctaagacaagacaagattagtaccagaggcttcccagattttagatacactctttctacagaggggtcccattccactttattttctttcacaagga 200  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||||| ||||| |    
T  31940137 tccctaagacaagacaagattagtaccaaaggctttccagattttagatacactctttcaacagaggggtcccattccacctttttttctttaacaagca 31940236  T
Q  201 ctcccttgaggtccctgaagtt 222  Q
    ||||||||||||||||||||||    
T  31940237 ctcccttgaggtccctgaagtt 31940258  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 89 - 186
Target Start/End: Original strand, 13536362 - 13536459
Alignment:
Q  89 aaaataaacatgtccctaagacaagacaagattagtaccagaggcttcccagattttagatacactctttctacagaggggtcccattccactttatt 186  Q
    ||||||||  |||||||||||||| |  |||||| ||||| |||||| |||||||||||  |   |||||| ||||||||||||||||||||||||||    
T  13536362 aaaataaatgtgtccctaagacaacaagagattaataccaaaggcttgccagattttagtaattgtctttcaacagaggggtcccattccactttatt 13536459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 13536272 - 13536320
Alignment:
Q  1 ttagaggaggtcccgcgaacaaatgtcatcgcataatctggaacctatg 49  Q
    |||||||| ||||| |||||||||| ||| |||||||||||||||||||    
T  13536272 ttagaggaagtcccacgaacaaatgacatggcataatctggaacctatg 13536320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 9390391 - 9390610
Alignment:
Q  1 ttagaggaggtcccgcgaacaaatgtcatcgcataatctggaacctatgtgnnnnnnngaaggttgtggtcaacaaagaactaatttcaaaataaacatg 100  Q
    ||||| |||||||| |||||||||||||| |||||||||||||||| ||||        ||||||||||||||||||||||||| |||||||||||  ||    
T  9390391 ttagaagaggtcccacgaacaaatgtcattgcataatctggaacctgtgtgggaaaaa-aaggttgtggtcaacaaagaactaacttcaaaataaatgtg 9390489  T
Q  101 tccctaagacaagacaagattagtaccagaggcttcccagattttagatacactctttctacagaggggtcccattccactttattttctttcacaagga 200  Q
    |||| |||||||| |||||||||||||| |||||| ||||||||||||||||||||||| || ||||||||||||||||| || |||||||| ||||| |    
T  9390490 tccc-aagacaagtcaagattagtaccaaaggctttccagattttagatacactctttcaactgaggggtcccattccaccttgttttctttaacaagca 9390588  T
Q  201 ctcccttgaggtccctgaagtt 222  Q
    ||||||||||||||||||||||    
T  9390589 ctcccttgaggtccctgaagtt 9390610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 69 - 222
Target Start/End: Original strand, 5640178 - 5640331
Alignment:
Q  69 gtcaacaaagaactaatttcaaaataaacatgtccctaagacaagacaagattagtaccagaggcttcccagattttagatacactctttctacagaggg 168  Q
    |||||||||||||||| |||||||||||    || ||||| ||| | ||||||||||||| ||||||||||||||| |||||||||||||| ||||||||    
T  5640178 gtcaacaaagaactaacttcaaaataaatgcatcgctaaggcaacagaagattagtaccaaaggcttcccagatttcagatacactctttcaacagaggg 5640277  T
Q  169 gtcccattccactttattttctttcacaaggactcccttgaggtccctgaagtt 222  Q
    |||||| |||||||| |||||||||||||| || ||||| ||||||||||||||    
T  5640278 gtcccactccacttttttttctttcacaagcacaccctttaggtccctgaagtt 5640331  T

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