View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20298_high_10 (Length: 451)
Name: NF20298_high_10
Description: NF20298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20298_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 244 - 437
Target Start/End: Complemental strand, 23445796 - 23445603
Alignment:
| Q |
244 |
gagaatttctaaggtaagacagtatgcatgtagtattaaaacagaaacagcgcttctaagcttatacagtatgttccaagatgaagttcaatacaagaac |
343 |
Q |
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| T |
23445796 |
gagaatttctaaggtaagacagtatgcatgtagtaataaaacagaaacagcgcttctaagcttatacagtatgttccaagatgaagttcaatacaagaac |
23445697 |
T |
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| Q |
344 |
aatcaacaacaacagcatgaacctcatcaccaacacttgtcatcatattactcaactttgagaaaccatgatttgatgttagaggggtaaaaga |
437 |
Q |
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| T |
23445696 |
aatcaacaacaacagcatgaacctcatcaccaacacttatcatcatattactcaactttgagaaaccatgatttgatgttagaggggtaaaaga |
23445603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 23446031 - 23445841
Alignment:
| Q |
9 |
agatgaatagaatgaaaacaatgatgcagttgacattaacaatgaatataactggttgggttccttcacacactcatcagtcacacccttttgttcatta |
108 |
Q |
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| T |
23446031 |
agatgaatagaatgaaaacaatgatgcagttgacattaacaatgaatataactggttgggttccttcacacactcatcagtcacacccttttgttcatta |
23445932 |
T |
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| Q |
109 |
ttcccattatgcccttcaaatctgatggatctctaaatgaagtggaagcatttagcaggtcacaagcacgaggttagtggcgcgctcaaatg |
200 |
Q |
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| T |
23445931 |
ttcccattatgccc-tcaaatctgatggatctctaaatgaagtggaagcatttagcaggtcacaagcacgaggttagcggcgcgctcaaatg |
23445841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 40188572 - 40188649
Alignment:
| Q |
109 |
ttcccattatgcccttcaaatctgatggatctctaaatgaagtggaagcatttagcaggtcacaagcacgaggttagt |
186 |
Q |
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| T |
40188572 |
ttcccattatgcctctcaaatctgatggatctctttttgaaatggaagctcttagcaggtcacaaacacaaggttagt |
40188649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 436
Target Start/End: Original strand, 40188910 - 40188972
Alignment:
| Q |
374 |
caacacttgtcatcatattactcaactttgagaaaccatgatttgatgttagaggggtaaaag |
436 |
Q |
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||||| ||||||| ||| |||||||||||||||||||||| ||||||||||| |||| |||| |
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| T |
40188910 |
caacatttgtcatattataactcaactttgagaaaccatgagttgatgttagaagggtcaaag |
40188972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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