View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20298_high_24 (Length: 250)
Name: NF20298_high_24
Description: NF20298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20298_high_24 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 52475915 - 52476148
Alignment:
| Q |
17 |
tcaagagtttcaattcaataatactgatactccttaccagcaataatcatcgttaagatattatctttgatctctttatctgttagcgttgttacttcat |
116 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52475915 |
tcaagagtttcaattcaataatactaatactccttaccagcaataatcatcgttaagatattatctttgatctctttatctgttagcgttgttacttcat |
52476014 |
T |
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| Q |
117 |
ccttttctgaattattttcatcatctgctaaaagttgctgaagaaaatctacacgcctgtctgcaatttcgtgtcttcttttgctgataacattctccaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52476015 |
ccttttctgaattattttcatcatctgctaaaagttgctgaagaaaatctacacgcctgtctgcaatttcgtgtcttcttttgctgataacattctccaa |
52476114 |
T |
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| Q |
217 |
tatgtccataactctttttctagcctgaattaac |
250 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
52476115 |
tatgtccataactctttttctagcctgaattaac |
52476148 |
T |
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