View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20298_high_27 (Length: 243)
Name: NF20298_high_27
Description: NF20298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20298_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 4 - 228
Target Start/End: Original strand, 7235281 - 7235494
Alignment:
| Q |
4 |
tataaagttattaaccatattatannnnnnnacctacaaagaggataaaatatgactaaaattctcatgttgttttatgctatgattgtatttcattcca |
103 |
Q |
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| T |
7235281 |
tataaagttattaaccatattatatttttttacctacaaagaggataaaatatgactaaaattctcatgttgttttatgctatgattgtatttcattcca |
7235380 |
T |
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| Q |
104 |
tatttcttgttgcatcgaaccttgatagtaagtcattttttcattcttttagaactttatt-aactacttaatagcttgtacataaaatttcatcccatt |
202 |
Q |
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| T |
7235381 |
tatttcttgttgcat------------gtaagtcattttttcattcttttagaattttattaaattacttaatagcttgtacataaaatttcatcccatt |
7235468 |
T |
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| Q |
203 |
ttacaaatgtttttcaattccctttt |
228 |
Q |
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| T |
7235469 |
ttacaaatgtttttcaattccctttt |
7235494 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 47736920 - 47736986
Alignment:
| Q |
51 |
aaatatgactaaaattctcatgttgttttatgctatgattgtatttcattccatatttcttgttgca |
117 |
Q |
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| T |
47736920 |
aaatatgactaaaactctgaagtttttttatgctatgattttatttctttccttgtttcttgttgca |
47736986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 27878465 - 27878414
Alignment:
| Q |
38 |
tacaaagaggataaaatatgactaaaattctcatgttgttttatgctatgat |
89 |
Q |
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| T |
27878465 |
tacaaagagaaaaaaatatgactgaaattctcaagttattttatgctatgat |
27878414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 23410712 - 23410752
Alignment:
| Q |
77 |
tttatgctatgattgtatttcattccatatttcttgttgca |
117 |
Q |
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| T |
23410712 |
tttatgctatgattctatttatttccatatttcttgttgca |
23410752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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