View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20298_high_7 (Length: 531)
Name: NF20298_high_7
Description: NF20298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20298_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 33328682 - 33328598
Alignment:
| Q |
19 |
gcttgatcatgataactgatgataatattgtccatcacatcactaatattcaaaacaaactccgtggaagagagtaaggatcatc |
103 |
Q |
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| T |
33328682 |
gcttgatcatgataactgatgataatattgtccatcacatcactaatattcaaaacaacctccgcggaagagagtaaggatcatc |
33328598 |
T |
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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 479 - 520
Target Start/End: Complemental strand, 33328474 - 33328433
Alignment:
| Q |
479 |
tgaaatattatgtactcaagatccacgcgtatgcatcttctt |
520 |
Q |
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| T |
33328474 |
tgaaatattatgtactcaagatccacgcatatgcatcttctt |
33328433 |
T |
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