View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20298_high_8 (Length: 514)
Name: NF20298_high_8
Description: NF20298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20298_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 40328275 - 40328512
Alignment:
| Q |
14 |
cataggttaagaaaatggaacaacacacaacagcttgaaatcaaaagtaattaatcaaacgtaatnnnnnnnnnnnnnggcactagtattgaattggctt |
113 |
Q |
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| T |
40328275 |
cataggttaagaaaatggaacaacacacaacagcttgaaatcaaaagtaattaatcaaacgtaataaaaaaaaaaa---gcactagtattgaattggctt |
40328371 |
T |
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| Q |
114 |
tgtcacaatcccttaaacaaacacttccttcctgtgccactcagaaagttacacatccacaaacctaaaatagaatggtcatctattacttttctttctt |
213 |
Q |
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| T |
40328372 |
tgtcacaatcccttaaacaaacacttccttcctgtgccactcagaaagttacacatccacaaacctaaaatagaatggtcatctattacttttctttctt |
40328471 |
T |
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| Q |
214 |
tctacaatataccctctatgctctatactcaaacattgttt |
254 |
Q |
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| T |
40328472 |
tctataatataccctctatgctctatactcaaacattgttt |
40328512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 342 - 498
Target Start/End: Original strand, 40328600 - 40328756
Alignment:
| Q |
342 |
aactcaagcaacaggcaagttacttattcaaagagaaagaatggaatccttaagaaagcaaaggaaataagtgttctttgtgatgctcaagtttccctta |
441 |
Q |
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| T |
40328600 |
aactcaagcaacaggcaagttacttattcaaagagaaagaatggaatccttaagaaagcaaaggaaataagtgttctttgtgatgctcaagtttccctta |
40328699 |
T |
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| Q |
442 |
ttctctttggtgcttctggaaagatgcatgaatacatcagcccttccaccacgtaag |
498 |
Q |
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| T |
40328700 |
ttctctttggtgcttctggaaagatgcatgaatacatcagcccttctaccacgtaag |
40328756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 342 - 497
Target Start/End: Complemental strand, 10225533 - 10225378
Alignment:
| Q |
342 |
aactcaagcaacaggcaagttacttattcaaagagaaagaatggaatccttaagaaagcaaaggaaataagtgttctttgtgatgctcaagtttccctta |
441 |
Q |
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||||||||||| || |||||||| |||||||||||||| | || || | |||||||| || ||||| | |||||| |||||||||||||||||| || |
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| T |
10225533 |
aactcaagcaatagacaagttacatattcaaagagaaaaagcgggattttaaagaaagctaaagaaatcaatgttctatgtgatgctcaagtttccacta |
10225434 |
T |
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| Q |
442 |
ttctctttggtgcttctggaaagatgcatgaatacatcagcccttccaccacgtaa |
497 |
Q |
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| T |
10225433 |
tcatcattgctccttctggaaaaatgcatgaatacattagcccttctaccacgtaa |
10225378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 428
Target Start/End: Original strand, 8201113 - 8201190
Alignment:
| Q |
351 |
aacaggcaagttacttattcaaagagaaagaatggaatccttaagaaagcaaaggaaataagtgttctttgtgatgct |
428 |
Q |
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||||||||||| || || |||||||||| |||||| || | ||||||||| | ||| | |||||||||||||||||| |
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| T |
8201113 |
aacaggcaagtgacatactcaaagagaaggaatggtatattcaagaaagcacatgaacttagtgttctttgtgatgct |
8201190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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