View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20298_low_12 (Length: 447)

Name: NF20298_low_12
Description: NF20298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20298_low_12
NF20298_low_12
[»] chr3 (4 HSPs)
chr3 (37-431)||(4542590-4542984)
chr3 (244-318)||(27099703-27099777)
chr3 (259-337)||(1048645-1048723)
chr3 (41-112)||(2177317-2177388)
[»] chr8 (9 HSPs)
chr8 (243-340)||(2167219-2167316)
chr8 (287-423)||(12707451-12707587)
chr8 (281-423)||(18920439-18920580)
chr8 (244-321)||(11940028-11940105)
chr8 (279-428)||(25467449-25467598)
chr8 (244-336)||(11914214-11914306)
chr8 (296-423)||(5872886-5873013)
chr8 (368-428)||(8030304-8030364)
chr8 (281-313)||(8030419-8030451)
[»] chr6 (2 HSPs)
chr6 (240-398)||(28972038-28972197)
chr6 (243-337)||(10587056-10587150)
[»] chr5 (4 HSPs)
chr5 (244-428)||(31242453-31242637)
chr5 (286-373)||(17040156-17040243)
chr5 (287-428)||(31176884-31177025)
chr5 (294-341)||(34668422-34668469)
[»] chr7 (2 HSPs)
chr7 (245-423)||(17713343-17713521)
chr7 (244-318)||(21684124-21684198)
[»] chr4 (4 HSPs)
chr4 (362-428)||(16604185-16604251)
chr4 (289-421)||(19593547-19593678)
chr4 (259-323)||(24831676-24831739)
chr4 (343-420)||(11508660-11508737)
[»] chr2 (3 HSPs)
chr2 (286-337)||(9926246-9926297)
chr2 (288-337)||(20114241-20114290)
chr2 (287-377)||(35662545-35662635)
[»] chr1 (4 HSPs)
chr1 (260-318)||(20289313-20289371)
chr1 (260-334)||(27538582-27538656)
chr1 (295-340)||(16479325-16479370)
chr1 (240-312)||(24232628-24232699)
[»] scaffold0263 (2 HSPs)
scaffold0263 (240-428)||(2899-3086)
scaffold0263 (240-428)||(24205-24392)


Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 37 - 431
Target Start/End: Original strand, 4542590 - 4542984
Alignment:
Q  37 caataacatactaaaatgcaaactttaattataacttcattatcccgtaactatatgaaagtttagctcatggtgaacttcaaaaaacacaaaacaaatg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4542590 caataacatactaaaatgcaaactttaattataacttcattatcccgtaactatatgaaagtttagctcatggtgaacttcaaaaaacacaaaacaaatg 4542689  T
Q  137 gaacagattaagatctccttcattactgagattatcaagggagaaaattaatttacaatagcaagaaaatatgtaatttgctacgataaaatttgtagtt 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4542690 gaacagattaagatctccttcattactgagattatcaagggagaaaattaatttacaatagcaagaaaatatgtaatttgctacgataaaatttgtagtt 4542789  T
Q  237 aatcgaatttagctagagaaaagctacagaataactatagagtcggccatagcatgaattgagagacaaatttgctagggaattaattcattgtaaatcc 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4542790 aatcgaatttagctagagaaaagctacagaataactatagagtcggccatagcatgaattgagagacaaatttgctagggaattaattcattgtaaatcc 4542889  T
Q  337 gcagtaattagaaaaagattcctaccaaatttttagttaatccagatcatacaagcattcaaaatgtattttcagtagcaacataaccatgaatt 431  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4542890 gcagtaattagaaaaagattcctaccaaatttttagttaatccagatcatacaagcattcaaaatgtattttcagtagcaacataaccatgaatt 4542984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 244 - 318
Target Start/End: Complemental strand, 27099777 - 27099703
Alignment:
Q  244 tttagctagagaaaagctacagaataactatagagtcggccatagcatgaattgagagacaaatttgctagggaa 318  Q
    |||||||||||| | ||||| ||||| |||| || |||||||||||||| ||||||||||||||||||| |||||    
T  27099777 tttagctagagatatgctacggaatatctattgaatcggccatagcatggattgagagacaaatttgctggggaa 27099703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 337
Target Start/End: Original strand, 1048645 - 1048723
Alignment:
Q  259 gctacagaataactatagagtcggccatagcatgaattgagagacaaatttgctagggaattaattcattgtaaatccg 337  Q
    ||||| |||||||||| || || ||  ||||||| |||||||||||||||||||||| ||||||| | | |||||||||    
T  1048645 gctacggaataactattgaatcagctgtagcatggattgagagacaaatttgctaggaaattaatccctagtaaatccg 1048723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 2177317 - 2177388
Alignment:
Q  41 aacatactaaaatgcaaactttaattataacttcattatcccgtaactatatgaaagtttagctcatggtga 112  Q
    ||||||||||||||||| | |||| |||||| ||||| | || ||||||||| ||  |||||||||||||||    
T  2177317 aacatactaaaatgcaagcattaactataacctcattgttccttaactatataaagttttagctcatggtga 2177388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 243 - 340
Target Start/End: Original strand, 2167219 - 2167316
Alignment:
Q  243 atttagctagagaaaagctacagaataactatagagtcggccatagcatgaattgagagacaaatttgctagggaattaattcattgtaaatccgcag 340  Q
    ||||||||||||| | ||||| |||||||||| || || ||| ||||||| |||||||||||||||||||| ||||||||||| | ||||||||||||    
T  2167219 atttagctagagatatgctacggaataactattgaatcagccgtagcatggattgagagacaaatttgctaaggaattaattcttagtaaatccgcag 2167316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 423
Target Start/End: Complemental strand, 12707587 - 12707451
Alignment:
Q  287 agcatgaattgagagacaaatttgctagggaattaattcattgtaaatccgcagtaattagaaaaagattcctaccaaatttttagttaatccagatcat 386  Q
    |||||| ||||||||| ||| || | ||||||||||||| | | ||||||| ||| |||| ||  | | ||||| || || |||||||| ||||   ||     
T  12707587 agcatggattgagagaaaaaatttccagggaattaattcttagcaaatccgtagttattaaaagtaaaatcctagcagatatttagttattccatcgcaa 12707488  T
Q  387 acaagcattcaaaatgtattttcagtagcaacataac 423  Q
    ||||||||||||||||||||||| |||||||||||||    
T  12707487 acaagcattcaaaatgtattttctgtagcaacataac 12707451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 423
Target Start/End: Original strand, 18920439 - 18920580
Alignment:
Q  281 ggccatagcatgaattgagagacaaatttgctagggaattaattcattgtaaatccgcagtaattagaaaaagattcctaccaaatttttagttaatcca 380  Q
    |||| ||||||| ||||||||||||||||||||||||| || ||| | ||||||||  ||| | |||||| | | ||| | ||||| |||||||| | ||    
T  18920439 ggccgtagcatggattgagagacaaatttgctagggaaatagttcttggtaaatccatagttaatagaaaca-aatcccagcaaatatttagttatttca 18920537  T
Q  381 gatcatacaagcattcaaaatgtattttcagtagcaacataac 423  Q
     | || || |  ||| ||||||||||||| |||||||||||||    
T  18920538 caccaaactattatttaaaatgtattttccgtagcaacataac 18920580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 321
Target Start/End: Complemental strand, 11940105 - 11940028
Alignment:
Q  244 tttagctagagaaaagctacagaataactatagagtcggccatagcatgaattgagagacaaatttgctagggaatta 321  Q
    |||||||||| | | ||||  ||||| |||| || |||||| ||||||| |||||||| |||||||||||||||||||    
T  11940105 tttagctagatatatgctagggaatacctattgattcggccgtagcatggattgagaggcaaatttgctagggaatta 11940028  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 428
Target Start/End: Original strand, 25467449 - 25467598
Alignment:
Q  279 tcggccatagcatgaattgagagacaaatttgctagggaattaattcattgtaaatccgcagtaattagaaaaagattcctaccaaatttttagttaatc 378  Q
    |||||| || |||| |||||||||||||||||||||||||||| | | | ||||||||| || ||  | || || | ||||| |||| ||||||| ||||    
T  25467449 tcggccgtaacatggattgagagacaaatttgctagggaattagtacttagtaaatccgtagcaagaaaaacaaaaatcctagcaaaattttagtgaatc 25467548  T
Q  379 cagatcatacaagcattcaaaatgtattttcagtagcaacataaccatga 428  Q
    |  | || | |||||||||||||  ||||||   ||||| ||||||||||    
T  25467549 cgcagcaaaaaagcattcaaaataaattttccacagcaaaataaccatga 25467598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 336
Target Start/End: Original strand, 11914214 - 11914306
Alignment:
Q  244 tttagctagagaaaagctacagaataactatagagtcggccatagcatgaattgagagacaaatttgctagggaattaattcattgtaaatcc 336  Q
    |||||||||||| | ||||  ||||| || | || || ||| ||||||| |||||||||||||||| ||||||||||| ||| | ||||||||    
T  11914214 tttagctagagatatgctagggaataccttttgattcagccgtagcatggattgagagacaaattttctagggaattatttcttagtaaatcc 11914306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 423
Target Start/End: Complemental strand, 5873013 - 5872886
Alignment:
Q  296 tgagagacaaatttgctagggaattaattcattgtaaatccgcagtaattagaaaaagattcctaccaaatttttagttaatccagatcatacaagcatt 395  Q
    |||| |||||||||||| ||||| || ||| |  |||||||| |||||  ||||| | ||||||| ||||| ||||||||||| | | || | ||| |||    
T  5873013 tgagggacaaatttgcttgggaaatatttcttactaaatccgtagtaaaaagaaataaattcctagcaaatatttagttaatctacagcaaataagtatt 5872914  T
Q  396 caaaatgtattttcagtagcaacataac 423  Q
     ||||||||||| |  ||||||||||||    
T  5872913 gaaaatgtatttcccatagcaacataac 5872886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 428
Target Start/End: Complemental strand, 8030364 - 8030304
Alignment:
Q  368 tttagttaatccagatcatacaagcattcaaaatgtattttcagtagcaacataaccatga 428  Q
    |||||||||| || | || | |||||||| |||||||||||| ||||||||||||| ||||    
T  8030364 tttagttaattcaaaacaaataagcattctaaatgtattttccgtagcaacataactatga 8030304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 313
Target Start/End: Complemental strand, 8030451 - 8030419
Alignment:
Q  281 ggccatagcatgaattgagagacaaatttgcta 313  Q
    |||| ||||||||||||||||||||||||||||    
T  8030451 ggccgtagcatgaattgagagacaaatttgcta 8030419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 398
Target Start/End: Complemental strand, 28972197 - 28972038
Alignment:
Q  240 cgaatttagctagagaaaagctacagaataactatagagtcggccatagcatgaattgagagacaaatttgctagggaattaattcattgtaaatccgca 339  Q
    |||||||||| |||||| ||||||||||| ||| ||||||   ||  |||||||||| |||||||||||| |  |||||| ||||| | ||||||||  |    
T  28972197 cgaatttagcaagagaagagctacagaattactgtagagttctccgcagcatgaattaagagacaaattttcccgggaataaattcctagtaaatccaaa 28972098  T
Q  340 gtaattagaaaaagattcctaccaaattt-ttagttaatccagatcatacaagcattcaa 398  Q
    |||||| |||||||| ||||| ||||||| |||||||||||| | || ||||||| ||||    
T  28972097 gtaattggaaaaagaatcctagcaaatttcttagttaatccacagcaaacaagcagtcaa 28972038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 337
Target Start/End: Original strand, 10587056 - 10587150
Alignment:
Q  243 atttagctagagaaaagctacagaataactatagagtcggccatagcatgaattgagagacaaatttgctagggaattaattcattgtaaatccg 337  Q
    |||||||| |||| | ||||| |||||||||| ||    ||| || |||| || ||||||||||||||||||||||||||||| | |||||||||    
T  10587056 atttagcttgagatatgctacggaataactattgaactagccgtatcatggatcgagagacaaatttgctagggaattaattcctagtaaatccg 10587150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 244 - 428
Target Start/End: Complemental strand, 31242637 - 31242453
Alignment:
Q  244 tttagctagagaaaagctacagaataactatagagtcggccatagcatgaattgagagacaaatttgctagggaattaattcattgtaaatccgcagtaa 343  Q
    |||||||||||||| ||||||||||| |||  || |||||||||||||| ||||||||||||||||||| || || || ||| | ||||||||| || ||    
T  31242637 tttagctagagaaatgctacagaatacctactgattcggccatagcatggattgagagacaaatttgctgggaaaatatttcttagtaaatccgtagaaa 31242538  T
Q  344 ttagaaaaagattcctaccaaatttttagttaatccagatcatacaagcattcaaaatgtattttcagtagcaacataaccatga 428  Q
      ||||  | ||||| | ||||| ||||| ||||| | | ||   ||| ||| |||||||||||||  |||||||||||| ||||    
T  31242537 aaagaattaaattccaagcaaatatttaggtaatctacagcaagtaagtattgaaaatgtattttccatagcaacataactatga 31242453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 373
Target Start/End: Complemental strand, 17040243 - 17040156
Alignment:
Q  286 tagcatgaattgagagacaaatttgctagggaattaattcattgtaaatccgcagtaattagaaaaagattcctaccaaatttttagt 373  Q
    |||||||  ||||||||||||||| || |||||||| ||||| ||||||||||||| | || ||  | | ||||||||||||||||||    
T  17040243 tagcatggtttgagagacaaatttacttgggaattatttcatagtaaatccgcagttagtaaaattataatcctaccaaatttttagt 17040156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 428
Target Start/End: Complemental strand, 31177025 - 31176884
Alignment:
Q  287 agcatgaattgagagacaaatttgctagggaattaattcattgtaaatccgcagtaattagaaaaagattcctaccaaatttttagttaatccagatcat 386  Q
    |||||| ||| |||||||||||||||||||||||||||| | | ||||| | || ||  |  | || | || || ||||| ||||||||||||  | ||     
T  31177025 agcatggattaagagacaaatttgctagggaattaattcttaggaaatctgtagcaagaaatacaaaaatcttagcaaatatttagttaatccgcagcaa 31176926  T
Q  387 acaagcattcaaaatgtattttcagtagcaacataaccatga 428  Q
    | |||||||||||||| |||||| | ||||| ||||||||||    
T  31176925 aaaagcattcaaaatgaattttccgcagcaaaataaccatga 31176884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 341
Target Start/End: Original strand, 34668422 - 34668469
Alignment:
Q  294 attgagagacaaatttgctagggaattaattcattgtaaatccgcagt 341  Q
    ||||||||||||| | |||||||||||| ||||| |||||||||||||    
T  34668422 attgagagacaaaatcgctagggaattatttcatagtaaatccgcagt 34668469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 245 - 423
Target Start/End: Original strand, 17713343 - 17713521
Alignment:
Q  245 ttagctagagaaaagctacagaataactatagagtcggccatagcatgaattgagagacaaatttgctagggaattaattcattgtaaatccgcagtaat 344  Q
    ||||||||||| ||||||| ||||| |||| || | |||| ||||||| ||| ||||||||||||||||||||| || ||| | ||||| ||| ||| |     
T  17713343 ttagctagagataagctacggaatacctatcgaattggccgtagcatggattaagagacaaatttgctagggaaatatttcttagtaaacccgtagttag 17713442  T
Q  345 tagaaaaagattcctaccaaatttttagttaatccagatcatacaagcattcaaaatgtattttcagtagcaacataac 423  Q
    |||||||    ||||| ||||| |||||||| |||| | || || || ||| |||| | |||||| |||||||||||||    
T  17713443 tagaaaacatatcctagcaaatatttagttattccatagcaaactagtattaaaaacgaattttctgtagcaacataac 17713521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 318
Target Start/End: Original strand, 21684124 - 21684198
Alignment:
Q  244 tttagctagagaaaagctacagaataactatagagtcggccatagcatgaattgagagacaaatttgctagggaa 318  Q
    |||||||||||| | ||| ||||||| |||| || |||||| ||||||  ||||||||||||  |||||||||||    
T  21684124 tttagctagagatatgctgcagaatacctattgattcggccgtagcatagattgagagacaacattgctagggaa 21684198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 362 - 428
Target Start/End: Original strand, 16604185 - 16604251
Alignment:
Q  362 caaatttttagttaatccagatcatacaagcattcaaaatgtattttcagtagcaacataaccatga 428  Q
    ||||||||||||||||||| | || || |||||||||||||||||||| | ||||||||||| ||||    
T  16604185 caaatttttagttaatccacaacaaactagcattcaaaatgtattttccgcagcaacataactatga 16604251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 421
Target Start/End: Complemental strand, 19593678 - 19593547
Alignment:
Q  289 catgaattgagagacaaatttgctagggaattaattcattgtaaatccgcagtaattagaaaaagattcctaccaaatttttagttaatccagatcatac 388  Q
    |||| ||||||||||||||||||||||||| | ||||   ||||| ||| ||  | |||||||| | ||||| |||||  |||||||||||| | || ||    
T  19593678 catggattgagagacaaatttgctagggaaatcattctcagtaaacccgtagctaatagaaaaa-actcctagcaaataattagttaatccatagcaaac 19593580  T
Q  389 aagcattcaaaatgtattttcagtagcaacata 421  Q
    ||| ||| ||||| ||||||| |||||||||||    
T  19593579 aagtatttaaaatatattttccgtagcaacata 19593547  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 323
Target Start/End: Original strand, 24831676 - 24831739
Alignment:
Q  259 gctacagaataactatagagtcggccatagcatgaattgagagacaaatttgctagggaattaat 323  Q
    |||||||| ||||||| || || ||| |||||||| |||||||||||||||||||||||||||||    
T  24831676 gctacagagtaactattgaatcagccgtagcatga-ttgagagacaaatttgctagggaattaat 24831739  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 420
Target Start/End: Original strand, 11508660 - 11508737
Alignment:
Q  343 attagaaaaagattcctaccaaatttttagttaatccagatcatacaagcattcaaaatgtattttcagtagcaacat 420  Q
    |||||||||  ||||||| |||| |||||||||||| | | || |||||  |||||||| ||||||||||||||||||    
T  11508660 attagaaaacaattcctagcaaaattttagttaatctatagcaaacaagtcttcaaaatatattttcagtagcaacat 11508737  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 337
Target Start/End: Original strand, 9926246 - 9926297
Alignment:
Q  286 tagcatgaattgagagacaaatttgctagggaattaattcattgtaaatccg 337  Q
    ||||||| ||||||||||||||||||||| |||||||||| | |||||||||    
T  9926246 tagcatggattgagagacaaatttgctagagaattaattcctagtaaatccg 9926297  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 337
Target Start/End: Original strand, 20114241 - 20114290
Alignment:
Q  288 gcatgaattgagagacaaatttgctagggaattaattcattgtaaatccg 337  Q
    ||||| |||||||||||||||||||||||||||| ||| | |||||||||    
T  20114241 gcatggattgagagacaaatttgctagggaattatttcttagtaaatccg 20114290  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 377
Target Start/End: Original strand, 35662545 - 35662635
Alignment:
Q  287 agcatgaattgagagacaaatttgctagggaattaattcattgtaaatccgcagtaattagaaaaagattcctaccaaatttttagttaat 377  Q
    |||||| ||||||||||||||||||||||||| || ||| |   ||||||| ||  | |||||||  ||||||||||||| | ||||||||    
T  35662545 agcatggattgagagacaaatttgctagggaactatttcctaacaaatccgtagagaatagaaaacaattcctaccaaatatatagttaat 35662635  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 20289313 - 20289371
Alignment:
Q  260 ctacagaataactatagagtcggccatagcatgaattgagagacaaatttgctagggaa 318  Q
    ||||| |||| |||| || ||||||  |||||| |||||||||||||||||||||||||    
T  20289313 ctacataatacctattgattcggccgaagcatggattgagagacaaatttgctagggaa 20289371  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 27538656 - 27538582
Alignment:
Q  260 ctacagaataactatagagtcggccatagcatgaattgagagacaaatttgctagggaattaattcattgtaaat 334  Q
    |||| |||||||||| ||  | ||| ||||||| || |||||||||||||||||||||| |||||| | ||||||    
T  27538656 ctacggaataactattgaaccagccgtagcatggatcgagagacaaatttgctagggaaataattcttagtaaat 27538582  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 16479370 - 16479325
Alignment:
Q  295 ttgagagacaaatttgctagggaattaattcattgtaaatccgcag 340  Q
    ||||||||||| ||||||||||||||||||| |  |||||||||||    
T  16479370 ttgagagacaattttgctagggaattaattcctaataaatccgcag 16479325  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 24232628 - 24232699
Alignment:
Q  240 cgaatttagctagagaaaagctacagaataactatagagtcggccatagcatgaattgagagacaaatttgct 312  Q
    ||||||||||||||||||  ||||  ||||||| | ||||||| | || |||| |||||||||||||||||||    
T  24232628 cgaatttagctagagaaatactacgtaataacttt-gagtcgggcgtaacatggattgagagacaaatttgct 24232699  T

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Target: scaffold0263 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 428
Target Start/End: Complemental strand, 3086 - 2899
Alignment:
Q  240 cgaatttagctagagaaaagctacagaataactatagagtcggccatagcatgaattgagagacaaatttgctagggaattaattcattgtaaatccgca 339  Q
    |||| ||||||||||| | ||||| ||||| |||| || | | || ||||||  || |||||| ||||||||||||||| | |||| | ||||||||  |    
T  3086 cgaagttagctagagatatgctacggaatagctattgaattgtccgtagcatagatggagagaaaaatttgctagggaaatcattcttagtaaatcctta 2987  T
Q  340 gtaattagaaaaagattcctaccaaatttttagttaatccagatcatacaagcattcaaaatgtattttcagtagcaacataaccatga 428  Q
    || | ||||||||   ||||| ||||| |||||||||||   | || | ||| ||||||| |||||||||  |||||| ||||| ||||    
T  2986 gttaatagaaaaa-cgtcctagcaaatatttagttaatctgtagcaaataagtattcaaattgtattttccatagcaagataactatga 2899  T

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Target: scaffold0263; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 428
Target Start/End: Complemental strand, 24392 - 24205
Alignment:
Q  240 cgaatttagctagagaaaagctacagaataactatagagtcggccatagcatgaattgagagacaaatttgctagggaattaattcattgtaaatccgca 339  Q
    |||| ||||||||||| | ||||| ||||| |||| || | | || ||||||  || |||||| ||||||||||||||| | |||| | ||||||||  |    
T  24392 cgaagttagctagagatatgctacggaatagctattgaattgtccgtagcatagatggagagaaaaatttgctagggaaatcattcttagtaaatcctta 24293  T
Q  340 gtaattagaaaaagattcctaccaaatttttagttaatccagatcatacaagcattcaaaatgtattttcagtagcaacataaccatga 428  Q
    || | ||||||||   ||||| ||||| |||||||||||   | || | ||| ||||||| |||||||||  |||||| ||||| ||||    
T  24292 gttaatagaaaaa-cgtcctagcaaatatttagttaatctgtagcaaataagtattcaaattgtattttccatagcaagataactatga 24205  T

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