View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20298_low_14 (Length: 395)

Name: NF20298_low_14
Description: NF20298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20298_low_14
NF20298_low_14
[»] chr3 (21 HSPs)
chr3 (86-379)||(52252235-52252525)
chr3 (18-82)||(45347655-45347719)
chr3 (18-82)||(49068165-49068229)
chr3 (18-73)||(46820148-46820203)
chr3 (18-82)||(28793276-28793340)
chr3 (18-82)||(21654359-21654423)
chr3 (22-82)||(23514559-23514619)
chr3 (18-82)||(31126326-31126390)
chr3 (18-82)||(43576071-43576135)
chr3 (18-82)||(46580649-46580713)
chr3 (18-82)||(55400852-55400916)
chr3 (18-82)||(26641054-26641118)
chr3 (18-82)||(32322181-32322245)
chr3 (18-82)||(34022713-34022777)
chr3 (18-82)||(37324025-37324089)
chr3 (18-82)||(51255300-51255364)
chr3 (20-82)||(46296018-46296080)
chr3 (18-82)||(13541347-13541411)
chr3 (18-82)||(53020297-53020361)
chr3 (18-60)||(52252150-52252192)
chr3 (18-63)||(51426733-51426778)
[»] chr4 (21 HSPs)
chr4 (18-82)||(37788561-37788625)
chr4 (18-82)||(53677425-53677489)
chr4 (18-82)||(28681769-28681833)
chr4 (18-82)||(29180358-29180422)
chr4 (18-82)||(29899825-29899889)
chr4 (18-82)||(30776430-30776494)
chr4 (18-82)||(32012273-32012337)
chr4 (18-82)||(39969935-39969999)
chr4 (19-82)||(9798021-9798084)
chr4 (20-73)||(38187683-38187736)
chr4 (18-82)||(3043113-3043177)
chr4 (18-82)||(10591449-10591513)
chr4 (18-82)||(30777597-30777661)
chr4 (18-82)||(55937649-55937713)
chr4 (18-73)||(38940979-38941034)
chr4 (18-85)||(51495259-51495326)
chr4 (18-73)||(52713165-52713220)
chr4 (20-82)||(49902139-49902201)
chr4 (18-82)||(43980608-43980672)
chr4 (18-63)||(27750313-27750358)
chr4 (18-82)||(50768555-50768619)
[»] chr1 (30 HSPs)
chr1 (18-82)||(40935596-40935660)
chr1 (17-82)||(28017768-28017833)
chr1 (18-82)||(25990861-25990925)
chr1 (18-82)||(38942424-38942488)
chr1 (18-82)||(40960457-40960521)
chr1 (18-82)||(43656020-43656084)
chr1 (18-82)||(45357860-45357924)
chr1 (18-82)||(49924532-49924596)
chr1 (18-85)||(15285916-15285983)
chr1 (18-85)||(28916495-28916562)
chr1 (18-82)||(9128156-9128220)
chr1 (18-82)||(18036657-18036721)
chr1 (18-82)||(23873810-23873874)
chr1 (18-82)||(31970292-31970356)
chr1 (18-82)||(46949434-46949498)
chr1 (29-85)||(4529300-4529356)
chr1 (18-82)||(18913328-18913392)
chr1 (18-82)||(39026229-39026293)
chr1 (18-82)||(47997067-47997131)
chr1 (16-73)||(15311288-15311345)
chr1 (18-82)||(6848293-6848356)
chr1 (18-82)||(18852336-18852400)
chr1 (18-82)||(26479852-26479916)
chr1 (18-82)||(26907074-26907138)
chr1 (18-70)||(35884324-35884376)
chr1 (18-82)||(35941954-35942018)
chr1 (18-82)||(44875292-44875356)
chr1 (18-73)||(29488861-29488916)
chr1 (20-82)||(35189316-35189379)
chr1 (18-82)||(40220169-40220236)
[»] chr5 (14 HSPs)
chr5 (16-82)||(8541544-8541610)
chr5 (18-82)||(24432380-24432444)
chr5 (18-82)||(8145993-8146057)
chr5 (18-82)||(13146844-13146908)
chr5 (18-82)||(16286063-16286127)
chr5 (18-82)||(25962428-25962492)
chr5 (18-82)||(31316781-31316845)
chr5 (16-73)||(37066212-37066269)
chr5 (18-82)||(20914974-20915038)
chr5 (18-82)||(31690600-31690664)
chr5 (18-82)||(35462699-35462763)
chr5 (18-82)||(42365150-42365214)
chr5 (18-85)||(12639004-12639071)
chr5 (20-82)||(30086527-30086589)
[»] chr8 (18 HSPs)
chr8 (18-82)||(34713644-34713708)
chr8 (18-82)||(11044173-11044237)
chr8 (18-82)||(27752702-27752766)
chr8 (18-82)||(35260173-35260237)
chr8 (18-82)||(44052737-44052801)
chr8 (18-73)||(31133019-31133074)
chr8 (18-73)||(35344483-35344538)
chr8 (16-82)||(44411190-44411256)
chr8 (18-82)||(3100069-3100133)
chr8 (18-82)||(11992844-11992908)
chr8 (18-82)||(27621246-27621310)
chr8 (20-82)||(24612461-24612523)
chr8 (20-82)||(36538176-36538238)
chr8 (18-63)||(37598185-37598230)
chr8 (18-82)||(12108271-12108335)
chr8 (23-63)||(39187351-39187391)
chr8 (18-73)||(35346294-35346349)
chr8 (37-82)||(32678499-32678544)
[»] chr7 (24 HSPs)
chr7 (18-82)||(7989246-7989310)
chr7 (18-82)||(19932993-19933057)
chr7 (18-82)||(23106565-23106629)
chr7 (18-82)||(43107843-43107907)
chr7 (18-82)||(44600558-44600622)
chr7 (16-82)||(41889281-41889347)
chr7 (18-63)||(19964151-19964196)
chr7 (18-82)||(3157548-3157612)
chr7 (18-82)||(41815631-41815695)
chr7 (18-73)||(22111277-22111332)
chr7 (18-73)||(40583257-40583312)
chr7 (18-82)||(18206257-18206321)
chr7 (18-82)||(32491045-32491109)
chr7 (18-82)||(35181304-35181368)
chr7 (20-63)||(45599019-45599062)
chr7 (16-63)||(48879498-48879545)
chr7 (18-73)||(23731672-23731729)
chr7 (20-73)||(9818582-9818635)
chr7 (20-73)||(10720507-10720560)
chr7 (18-59)||(36576529-36576570)
chr7 (18-82)||(42617783-42617847)
chr7 (18-59)||(34808331-34808372)
chr7 (18-82)||(40560494-40560558)
chr7 (18-62)||(47383518-47383562)
[»] chr2 (21 HSPs)
chr2 (18-82)||(8784508-8784572)
chr2 (18-82)||(14565352-14565416)
chr2 (18-82)||(43451618-43451682)
chr2 (16-82)||(38549622-38549688)
chr2 (18-82)||(792335-792399)
chr2 (18-82)||(5091519-5091583)
chr2 (18-82)||(15858668-15858732)
chr2 (18-82)||(21539870-21539934)
chr2 (18-82)||(35832525-35832589)
chr2 (16-82)||(38071429-38071495)
chr2 (18-63)||(4092124-4092169)
chr2 (21-82)||(43075865-43075926)
chr2 (18-75)||(44804011-44804068)
chr2 (18-82)||(10478291-10478355)
chr2 (18-82)||(10979282-10979346)
chr2 (18-82)||(29514454-29514518)
chr2 (22-73)||(38564705-38564756)
chr2 (18-63)||(28492633-28492678)
chr2 (18-58)||(4033678-4033718)
chr2 (18-82)||(29513999-29514062)
chr2 (18-82)||(33635449-33635513)
[»] chr6 (9 HSPs)
chr6 (18-82)||(12278819-12278883)
chr6 (18-82)||(17721789-17721853)
chr6 (18-82)||(30766559-30766623)
chr6 (21-82)||(10228028-10228089)
chr6 (18-82)||(374212-374276)
chr6 (18-82)||(5121436-5121500)
chr6 (18-82)||(30949248-30949312)
chr6 (18-62)||(17598406-17598450)
chr6 (18-82)||(31887101-31887165)
[»] scaffold0495 (1 HSPs)
scaffold0495 (21-82)||(4746-4807)


Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 86 - 379
Target Start/End: Original strand, 52252235 - 52252525
Alignment:
Q  86 gtacatgacaaccaaaacatcttaactatcttgcgaatgcataatgccttaaacttttctacgatatatttcctataatcatttacgtaattttagactt 185  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  52252235 gtacatgacaaccaaaacatcttaactatgttgcgaatgcataatgccttaaacttttctacgatatatttcctatcatcatttacgttattttagactt 52252334  T
Q  186 catacttctacaatgtgagcctatcatcacacgcctcccgtcatgtatgaattagttattgcaagtttgatcttcgacaccccaaatccatgacttttac 285  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  52252335 catacttctacaatgtgagcctatcat--cacgcctcccgtcatgtatgaattagttattgcaagtttgatcttcgacaccccaaatccaagacttttac 52252432  T
Q  286 aaaattttgcataaacgaaatgaacttgttgcgtttacgaattttgaannnnnnnnnnnaagcaaaatttgaataacttatttatatttatctt 379  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||    
T  52252433 aaaattttgcataaacgaaatgaatttgttgcgtttacgaattttgaa-ttttttttttaagcaaaatttgaataacttatttatatttatctt 52252525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 45347719 - 45347655
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| | ||||||    
T  45347719 acaaaaaatcatacctcaaatcactaagtgttagttttcttaataaatatgaattagtgtttttt 45347655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 49068165 - 49068229
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  49068165 acaaaaaattatatctcaaatcactaagtgttagttttcttaataaatgtgaattaatatttttt 49068229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 46820148 - 46820203
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaatta 73  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  46820148 acaaaaaatcatacctcaaatcactaagtgttagttttcttaataaatgtgaatta 46820203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 28793276 - 28793340
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||| ||||||||    
T  28793276 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattattatttttt 28793340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 21654359 - 21654423
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||| | ||||||    
T  21654359 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattagtgtttttt 21654423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 23514559 - 23514619
Alignment:
Q  22 aaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||| ||||||||||||| |||||||||||| ||||||||||| ||||||||| ||||||    
T  23514559 aaaattatacctcaaatcaataagtgttagttttcttaataaatgtgaattaatgtttttt 23514619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 31126326 - 31126390
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||| | ||||||    
T  31126326 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattagtgtttttt 31126390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 43576071 - 43576135
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||||||||||||||||||||||||||| || ||||||||| | ||||||| | ||||||    
T  43576071 acaaaaaatcatacctcaaatcactaagtgttaattttcttaataagtatgaattagtgtttttt 43576135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 46580649 - 46580713
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||| | ||||||    
T  46580649 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattagtgtttttt 46580713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 55400852 - 55400916
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||| | ||||||    
T  55400852 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattagtgtttttt 55400916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 26641118 - 26641054
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||| |||||||||||||||||||||| ||||||||| | ||||||| | ||||||    
T  26641118 acaaaaaattatatctcaaatcactaagtgttagttttcttaataagtgtgaattagtgtttttt 26641054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 32322245 - 32322181
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||||||||||||||| || ||||||||| | ||||||| | ||||||    
T  32322245 acaaaaaattatacctcaaatcactaagtgttaattttcttaataagtgtgaattagtgtttttt 32322181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 34022713 - 34022777
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||||||||||| |||||| ||||||||| | ||||||| | ||||||    
T  34022713 acaaaaaattatacctcaaatcactaagtattagttttcttaataagtgtgaattagtgtttttt 34022777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 37324089 - 37324025
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||| |||||||||||||||||||||| ||||||||| | ||||||| | ||||||    
T  37324089 acaaaaaattatatctcaaatcactaagtgttagttttcttaataagtgtgaattagtgtttttt 37324025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 51255300 - 51255364
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||| ||| || |||| ||||||||| ||||||||||| ||||||||||||||||    
T  51255300 acaaaaaattatacttcatattactacgtgttagttttcttaataaatatgaattaatatttttt 51255364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 46296080 - 46296018
Alignment:
Q  20 aaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||| |||||||||||||||||  ||||||| ||||||||| | ||||||| ||||||||    
T  46296080 aaaaaattatacctcaaatcactaaccgttagttttcttaataagtgtgaattagtatttttt 46296018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 13541347 - 13541411
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||| ||||||||||| || ||||||||| | ||||||| | ||||||    
T  13541347 acaaaaaattatacctcaaattactaagtgttaattttcttaataagtgtgaattagtgtttttt 13541411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 53020297 - 53020361
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||| ||||||||||||| |||||||| ||||||||| | ||||||| | ||||||    
T  53020297 acaaaaaattataactcaaatcactaaatgttagttttcttaataagtgtgaattagtgtttttt 53020361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 52252150 - 52252192
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaa 60  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||    
T  52252150 acaaaaaattatacttcaaatcactaagtgttagttttcttaa 52252192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 51426733 - 51426778
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataa 63  Q
    ||||||||| ||||||||||||||||| |||||||| | |||||||    
T  51426733 acaaaaaattatacctcaaatcactaaatgttagtttttttaataa 51426778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 37788561 - 37788625
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||||||||||||    
T  37788561 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattaatatttttt 37788625  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 53677489 - 53677425
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||||| ||||||    
T  53677489 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattaatgtttttt 53677425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 28681769 - 28681833
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||||||||| |||||||| ||||||||| | ||||||| ||||||||    
T  28681769 acaaaaaattatacctcaaatcactaaatgttagttttcttaataagtgtgaattagtatttttt 28681833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 29180422 - 29180358
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||| | ||||||    
T  29180422 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattagtgtttttt 29180358  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 29899825 - 29899889
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||||||| ||||||| | ||||||    
T  29899825 acaaaaaattatacctcaaatcactacgtgttagttttcttaataaatgtgaattagtgtttttt 29899889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 30776494 - 30776430
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||| | ||||||    
T  30776494 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattagtttttttt 30776430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 32012337 - 32012273
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||||| |||||||||||| ||||||||| | ||||||||| ||||||    
T  32012337 acaaaaaattatacctcaaatcattaagtgttagttttcttaataagtgtgaattaatgtttttt 32012273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 39969999 - 39969935
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||| | ||||||    
T  39969999 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattactgtttttt 39969935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 9798084 - 9798021
Alignment:
Q  19 caaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    |||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||| | ||||||    
T  9798084 caaaaaattatacctcaaatcactaaatgttagttttcttaataaatgtgaattagtgtttttt 9798021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 38187736 - 38187683
Alignment:
Q  20 aaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaatta 73  Q
    ||||||| |||||||||||||||||||||||||| ||||||||| | |||||||    
T  38187736 aaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaatta 38187683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 3043177 - 3043113
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||| |||||||||||||||| ||||||||| | ||||||| | ||||||    
T  3043177 acaaaaaattatacctcaactcactaagtgttagttttcttaataagtgtgaattagtgtttttt 3043113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 10591513 - 10591449
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||||||||| |||||||| ||||||||| | ||||||| | ||||||    
T  10591513 acaaaaaattatacctcaaatcactaaatgttagttttcttaataagtgtgaattactgtttttt 10591449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 30777597 - 30777661
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||||||||| |||||||| ||||||||| | ||||||| | ||||||    
T  30777597 acaaaaaattatacctcaaatcactaattgttagttttcttaataagtgtgaattagtgtttttt 30777661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 55937713 - 55937649
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||| | |||||||||||||||||||||||||| ||||||||| | ||||||| | ||||||    
T  55937713 acaaaaacttatacctcaaatcactaagtgttagttttcttaataagtatgaattagtgtttttt 55937649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 38940979 - 38941034
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaatta 73  Q
    ||||||||| ||||||||||||| |||||||||||| ||||||||| | |||||||    
T  38940979 acaaaaaattatacctcaaatcattaagtgttagttttcttaataagtgtgaatta 38941034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 51495259 - 51495326
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatattttttctt 85  Q
    ||||||||| ||||||||||||| ||||||||| || ||||||||| | ||||||| | |||||||||    
T  51495259 acaaaaaattatacctcaaatcattaagtgttaattttcttaataactgtgaattagtgttttttctt 51495326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 52713165 - 52713220
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaatta 73  Q
    ||||||||| |||| |||||||||||||| |||||| ||||||||||| |||||||    
T  52713165 acaaaaaattatacttcaaatcactaagtattagttttcttaataaatatgaatta 52713220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 49902139 - 49902201
Alignment:
Q  20 aaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||| |||| ||||||||||||||||||||| ||||||||| | ||||||| | ||||||    
T  49902139 aaaaaattatacttcaaatcactaagtgttagttttcttaataagtgtgaattagtgtttttt 49902201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 43980608 - 43980672
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||| | ||||||||||||||||| |||||||| ||||||||| | ||||||| | ||||||    
T  43980608 acaaaaatttatacctcaaatcactaaatgttagttttcttaataagtgtgaattagtgtttttt 43980672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 27750358 - 27750313
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataa 63  Q
    ||||||||||||| ||||||||||||| ||||| || |||||||||    
T  27750358 acaaaaaatcatatctcaaatcactaaatgttaattttcttaataa 27750313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 50768555 - 50768619
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||| ||| ||||||||||| |||||| ||||||||| | ||||||| | ||||||    
T  50768555 acaaaaaattatatctcgaatcactaagtattagttttcttaataagtgtgaattagtgtttttt 50768619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 40935660 - 40935596
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| | ||||||    
T  40935660 acaaaaaatcatacctcaaatcactaagtgttagttttcttaataaatgtgaattagtgtttttt 40935596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 28017768 - 28017833
Alignment:
Q  17 tacaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||||| ||||||    
T  28017768 tacaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattaatgtttttt 28017833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 25990861 - 25990925
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||| ||| ||||| ||||||    
T  25990861 acaaaaaattatacctcaaatcactaagtgttagttttcttaataaatgtgatttaatgtttttt 25990925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 38942488 - 38942424
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||||| ||||||    
T  38942488 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattaatgtttttt 38942424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 40960521 - 40960457
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| | ||||||    
T  40960521 acaaaaaatcatgcctcaaatcactaagtgttagttttcttaataaatgtgaattagtgtttttt 40960457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 43656084 - 43656020
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||||| ||||||    
T  43656084 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattaatgtttttt 43656020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 45357924 - 45357860
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||||| ||||||    
T  45357924 acaaaaaattatacctcaaatcactaagtgttagttgtcttaataagtgtgaattaatgtttttt 45357860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 49924532 - 49924596
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||||| ||||||    
T  49924532 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattaatgtttttt 49924596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 15285916 - 15285983
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatattttttctt 85  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||||| | ||||||||| |||||||||    
T  15285916 acaaaaaattatacttcaaatcactaagtgttagttttcttaataagtgtgaattaatgttttttctt 15285983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 28916562 - 28916495
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatattttttctt 85  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||| | |||||||||    
T  28916562 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattagtgttttttctt 28916495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 9128156 - 9128220
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||  ||||||||||||||||||||||| || ||||||||| | ||||||||||||||||    
T  9128156 acaaaaaagtatacctcaaatcactaagtgttaattttcttaataagtgtgaattaatatttttt 9128220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 18036657 - 18036721
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||||| |||||||||||| ||||||||| | ||||||||| ||||||    
T  18036657 acaaaaaattatacctcaaatcattaagtgttagttttcttaataagtatgaattaatgtttttt 18036721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 23873874 - 23873810
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||| | ||||||    
T  23873874 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattagtgtttttt 23873810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 31970356 - 31970292
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||||||||||||||||||||||||||| |  ||||||||| | ||||||| ||||||||    
T  31970356 acaaaaaatcatacctcaaatcactaagtgttaatcttcttaataagtgtgaattagtatttttt 31970292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 46949434 - 46949498
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||| |||||||||||||||||||||| ||||||||||| ||||||| | ||||||    
T  46949434 acaaaaaattatatctcaaatcactaagtgttagttttcttaataaatgtgaattagtgtttttt 46949498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 4529300 - 4529356
Alignment:
Q  29 tacctcaaatcactaagtgttagttctcttaataaatttgaattaatattttttctt 85  Q
    ||||||||||||||||||||||||| ||||||||| | ||||||| | |||||||||    
T  4529300 tacctcaaatcactaagtgttagttttcttaataagtatgaattagtgttttttctt 4529356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 18913392 - 18913328
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||||||||| |||||||| ||||||||| | ||||||| | ||||||    
T  18913392 acaaaaaattatacctcaaatcactaaatgttagttttcttaataagtgtgaattagtgtttttt 18913328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 39026293 - 39026229
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||| ||||||||| ||||||||||| ||||||||||| ||||||| | ||||||    
T  39026293 acaaaaaattatacatcaaatcaccaagtgttagttttcttaataaatgtgaattagtgtttttt 39026229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 47997067 - 47997131
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||||||||| |||||||| ||||||||| | ||||||| | ||||||    
T  47997067 acaaaaaataatacctcaaatcactaaatgttagttttcttaataagtgtgaattactgtttttt 47997131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 15311288 - 15311345
Alignment:
Q  16 atacaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaatta 73  Q
    ||||||||||| ||||||||||||| ||||| |||||| ||||||||| | |||||||    
T  15311288 atacaaaaaattatacctcaaatcattaagtattagttttcttaataagtgtgaatta 15311345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 6848356 - 6848293
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||||||||||||||||||||| | |||||| | ||||||||| ||||||| | ||||||    
T  6848356 acaaaaaatcatacctcaaatcactaattattagtt-ttttaataaatgtgaattagtgtttttt 6848293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 18852336 - 18852400
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||||||||| |||||| | ||||||||| | ||||||| | ||||||    
T  18852336 acaaaaaattatacctcaaatcactaactgttagctttcttaataagtgtgaattagtgtttttt 18852400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 26479852 - 26479916
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||||||||| |||||||| | ||||||| | ||||||| | ||||||    
T  26479852 acaaaaaattatacctcaaatcactaaatgttagtttttttaataagtgtgaattattgtttttt 26479916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 26907138 - 26907074
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||||| ||||| |||||| ||||||||| | ||||||| | ||||||    
T  26907138 acaaaaaattatacctcaaatcattaagtattagttttcttaataagtgtgaattagtgtttttt 26907074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 35884324 - 35884376
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaa 70  Q
    ||||||||| ||||||||||| |||||| ||||||| ||||||||||| ||||    
T  35884324 acaaaaaattatacctcaaattactaagagttagttttcttaataaatgtgaa 35884376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 35941954 - 35942018
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||| | |||||||||||| ||||||||| | ||||||| | ||||||    
T  35941954 acaaaaaattatacctcaaataattaagtgttagttttcttaataagtgtgaattagtgtttttt 35942018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 44875292 - 44875356
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||| | |||||||||||||||||||||||||| ||||| ||| | ||||||| | ||||||    
T  44875292 acaaaaatttatacctcaaatcactaagtgttagttttcttagtaagtgtgaattagtgtttttt 44875356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 29488861 - 29488916
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaatta 73  Q
    |||| |||| |||||||||||||||||||||| ||| ||||||||| | |||||||    
T  29488861 acaacaaattatacctcaaatcactaagtgttcgttttcttaataagtgtgaatta 29488916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 35189316 - 35189379
Alignment:
Q  20 aaaaaatcatacctcaaatcactaagtgttag-ttctcttaataaatttgaattaatatttttt 82  Q
    ||||||| ||||||||||| |||||||||||| || ||||||||||| ||||||| | ||||||    
T  35189316 aaaaaattatacctcaaattactaagtgttagtttttcttaataaatgtgaattagtgtttttt 35189379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 40220169 - 40220236
Alignment:
Q  18 acaaaaaatcatacctcaaatcacta---agtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||||||||   |||||||||| ||||||||| | ||||||| | ||||||    
T  40220169 acaaaaaattatacctcaaatcactactaagtgttagttttcttaataagtgtgaattactgtttttt 40220236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 8541610 - 8541544
Alignment:
Q  16 atacaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||||| ||||||    
T  8541610 atacaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattaatgtttttt 8541544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 24432444 - 24432380
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||||| ||||||    
T  24432444 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattaatctttttt 24432380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 8146057 - 8145993
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||||||| |||||||||| ||||||||| | ||||||||| ||||||    
T  8146057 acaaaaaattatacctcaaatcactgagtgttagttttcttaataagtgtgaattaatgtttttt 8145993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 13146844 - 13146908
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| || |||||| | ||||||| ||||||||    
T  13146844 acaaaaaattatacctcaaatcactaagtgttagttttcataataagtatgaattagtatttttt 13146908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 16286127 - 16286063
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||||||||||||||| || ||||||||| | ||||||||| ||||||    
T  16286127 acaaaaaattatacctcaaatcactaagtgttaattttcttaataagtgtgaattaatgtttttt 16286063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 25962492 - 25962428
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||| | ||||||    
T  25962492 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattattctttttt 25962428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 31316845 - 31316781
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||| | ||||||    
T  31316845 acaaaaaattatacctcaaatcactaagtgttagttttcttaataactgtgaattagtgtttttt 31316781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 37066269 - 37066212
Alignment:
Q  16 atacaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaatta 73  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||| | |||||||    
T  37066269 atacaaaaaattatacctcaaatcattaagtgttagttttcttaataagtgtgaatta 37066212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 20914974 - 20915038
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||| || ||||||||||||||||||| ||||||||| | ||||||| ||||||||    
T  20914974 acaaaaaattatatcttaaatcactaagtgttagttttcttaataagtgtgaattagtatttttt 20915038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 31690664 - 31690600
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||||||||||| ||| || ||||||||| | ||||||| ||||||||    
T  31690664 acaaaaaattatacctcaaatcactaagtattaattttcttaataagtgtgaattagtatttttt 31690600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 35462763 - 35462699
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||||| |||||||||||| ||||||||| | ||||||| | ||||||    
T  35462763 acaaaaaattatacctcaaatcattaagtgttagttttcttaataagtgtgaattagtgtttttt 35462699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 42365150 - 42365214
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    |||||||||  |||||||||||||||||| |||||| ||||||||||| ||||||| | ||||||    
T  42365150 acaaaaaattgtacctcaaatcactaagtattagttttcttaataaatatgaattagtgtttttt 42365214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 12639004 - 12639071
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatattttttctt 85  Q
    ||||||||| ||||||||||| ||||| |||||||| ||||||||| | ||||||| | |||||||||    
T  12639004 acaaaaaattatacctcaaataactaaatgttagttttcttaataagtgtgaattagtgttttttctt 12639071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 30086589 - 30086527
Alignment:
Q  20 aaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||| ||||||||||| ||||| |||||||| ||||||||| | ||||||||| ||||||    
T  30086589 aaaaaattatacctcaaattactaaatgttagttttcttaataagtgtgaattaatgtttttt 30086527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 34713644 - 34713708
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||||||||||| |||||| ||||||||||| ||||||| ||||||||    
T  34713644 acaaaaaattatacctcaaatcactaagtattagttttcttaataaatgtgaattagtatttttt 34713708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 11044173 - 11044237
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||| | ||||||    
T  11044173 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattagtgtttttt 11044237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 27752702 - 27752766
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||| | ||||||    
T  27752702 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattagtgtttttt 27752766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 35260173 - 35260237
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||| | ||||||    
T  35260173 acaaaaaatgatacctcaaatcactaagtgttagttttcttaataagtgtgaattagtgtttttt 35260237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 44052737 - 44052801
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||||||| |||||||||| ||||||||| | ||||||| ||||||||    
T  44052737 acaaaaaattatacctcaaatcactgagtgttagttttcttaataagtgtgaattagtatttttt 44052801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 31133074 - 31133019
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaatta 73  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | |||||||    
T  31133074 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaatta 31133019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 35344483 - 35344538
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaatta 73  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | |||||||    
T  35344483 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaatta 35344538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 44411256 - 44411190
Alignment:
Q  16 atacaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||||| |||| ||||||||||||||||||||| ||||||||| | ||||||| | ||||||    
T  44411256 atacaaaaaattatacttcaaatcactaagtgttagttttcttaataagtgtgaattagtgtttttt 44411190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 3100069 - 3100133
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||||| |||||||||||| ||||||||| | ||||||| | ||||||    
T  3100069 acaaaaaattatacctcaaatcattaagtgttagttttcttaataagtgtgaattagtgtttttt 3100133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 11992844 - 11992908
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||| | | ||||||| | ||||||    
T  11992844 acaaaaaattatacctcaaatcactaagtgttagttttcttaattagtgtgaattagtgtttttt 11992908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 27621246 - 27621310
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||||| | ||||||| | ||||||    
T  27621246 acaaaaaattatacttcaaatcactaagtgttagttttcttaataagtgtgaattagtgtttttt 27621310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 24612523 - 24612461
Alignment:
Q  20 aaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||| ||||||||||||||||||||||| || ||||||||| | ||||||| | ||||||    
T  24612523 aaaaaattatacctcaaatcactaagtgttaattttcttaataagtgtgaattagtgtttttt 24612461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 36538176 - 36538238
Alignment:
Q  20 aaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||| || |||||||||||||| |||||||| ||||||||||| ||||||| | ||||||    
T  36538176 aaaaaattattcctcaaatcactaaatgttagttttcttaataaatgtgaattagtgtttttt 36538238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 37598185 - 37598230
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataa 63  Q
    ||||||||| ||||||||||||| |||||||||||| |||||||||    
T  37598185 acaaaaaattatacctcaaatcagtaagtgttagttttcttaataa 37598230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 12108271 - 12108335
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||| |||||| ||||| |||||||| ||||||||| |  |||||||||||||||    
T  12108271 acaaaaaattatacttcaaattactaaatgttagttttcttaataagtgagaattaatatttttt 12108335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 39187351 - 39187391
Alignment:
Q  23 aaatcatacctcaaatcactaagtgttagttctcttaataa 63  Q
    |||| |||||||||||||||||||||||||| |||||||||    
T  39187351 aaattatacctcaaatcactaagtgttagttttcttaataa 39187391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 35346349 - 35346294
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaatta 73  Q
    ||||||||| ||||||||||||||||| | ||| || ||||||||||| |||||||    
T  35346349 acaaaaaattatacctcaaatcactaaatattaattttcttaataaatgtgaatta 35346294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 32678544 - 32678499
Alignment:
Q  37 atcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||||||||||| ||||||||| | ||||||||| ||||||    
T  32678544 atcactaagtgttagttttcttaataagtgtgaattaatgtttttt 32678499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 7989310 - 7989246
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||||| ||||||    
T  7989310 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattaatgtttttt 7989246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 19933057 - 19932993
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| | ||||||    
T  19933057 acaaaaaatcatacctcaaatcactaagtgttagttttcttaataagtgtgaattagtgtttttt 19932993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 23106565 - 23106629
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||| ||||||||    
T  23106565 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattagtatttttt 23106629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 43107907 - 43107843
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||| | ||||||    
T  43107907 acaaaaaattatacctcaaatcactaagtgttagttttcttaataaatgtgaattagtgtttttt 43107843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 44600558 - 44600622
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||| ||||||||||||| ||||||||||| ||||||| ||||||||    
T  44600558 acaaaaaattatacctcaaatcgctaagtgttagttttcttaataaatgtgaattagtatttttt 44600622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 41889281 - 41889347
Alignment:
Q  16 atacaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||||| |||| ||||||||||||||||||||| ||||||||| | ||||||||| ||||||    
T  41889281 atacaaaaaattatacatcaaatcactaagtgttagttttcttaataagtgtgaattaatgtttttt 41889347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 19964196 - 19964151
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataa 63  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  19964196 acaaaaaatcatacctcaaatcactaagtgttagttttcttaataa 19964151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 3157548 - 3157612
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||| | ||||||    
T  3157548 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtatgaattagtgtttttt 3157612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 41815695 - 41815631
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | | ||||| ||||||||    
T  41815695 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtcaattattatttttt 41815631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 22111332 - 22111277
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaatta 73  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | |||||||    
T  22111332 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaatta 22111277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 40583257 - 40583312
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaatta 73  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | |||||||    
T  40583257 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaatta 40583312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 18206321 - 18206257
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||||||||||||||| || ||||||||| | ||||||| | ||||||    
T  18206321 acaaaaaattatacctcaaatcactaagtgttaattttcttaataagtgtgaattagtgtttttt 18206257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 32491109 - 32491045
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||| ||||||||| ||||||||||| ||||||||||| ||||||| | ||||||    
T  32491109 acaaaaaattatacatcaaatcaccaagtgttagttttcttaataaatgtgaattagtgtttttt 32491045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 35181304 - 35181368
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||||| |||||||||||| ||||||||| | ||||||| | ||||||    
T  35181304 acaaaaaattatacctcaaatcagtaagtgttagttttcttaataagtgtgaattagtgtttttt 35181368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 45599019 - 45599062
Alignment:
Q  20 aaaaaatcatacctcaaatcactaagtgttagttctcttaataa 63  Q
    ||||||| |||||||||||||||||||||||||| |||||||||    
T  45599019 aaaaaattatacctcaaatcactaagtgttagttttcttaataa 45599062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 48879498 - 48879545
Alignment:
Q  16 atacaaaaaatcatacctcaaatcactaagtgttagttctcttaataa 63  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||    
T  48879498 atacaaaaaattatacctcaaatcattaagtgttagttttcttaataa 48879545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 23731672 - 23731729
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgt--tagttctcttaataaatttgaatta 73  Q
    |||||||||||||| ||||||||||||||||  ||||| ||||||||||| |||||||    
T  23731672 acaaaaaatcatacatcaaatcactaagtgttatagttttcttaataaatgtgaatta 23731729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 9818582 - 9818635
Alignment:
Q  20 aaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaatta 73  Q
    ||||||| ||||||||||||||||| |||||||| ||||||||| | |||||||    
T  9818582 aaaaaattatacctcaaatcactaaatgttagttttcttaataagtgtgaatta 9818635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 10720507 - 10720560
Alignment:
Q  20 aaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaatta 73  Q
    ||||||| ||||||||||||||||| |||||||| ||||||||| | |||||||    
T  10720507 aaaaaattatacctcaaatcactaaatgttagttttcttaataagtgtgaatta 10720560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 36576529 - 36576570
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctctta 59  Q
    ||||||||| |||||||||||||||||||||||||| |||||    
T  36576529 acaaaaaattatacctcaaatcactaagtgttagttttctta 36576570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 42617783 - 42617847
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||||| |||||||||||| | ||||||| | ||||||| | ||||||    
T  42617783 acaaaaaattatacctcaaatcattaagtgttagtttttttaataagtgtgaattagtgtttttt 42617847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 34808331 - 34808372
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctctta 59  Q
    ||||||||| ||||||||||||||||||| |||||| |||||    
T  34808331 acaaaaaattatacctcaaatcactaagtattagttttctta 34808372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 40560494 - 40560558
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||| | |||||||||||| | ||||||| | | ||||||| ||||||    
T  40560494 acaaaaaattatacctcaaattattaagtgttagtttttttaataagtgtaaattaatgtttttt 40560558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 47383518 - 47383562
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaata 62  Q
    ||||||||| ||| ||||||||| |||||||||||| ||||||||    
T  47383518 acaaaaaattatatctcaaatcattaagtgttagttttcttaata 47383562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 8784508 - 8784572
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||||| ||||||    
T  8784508 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtatgaattaatgtttttt 8784572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 14565416 - 14565352
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||||| ||||||    
T  14565416 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattaatgtttttt 14565352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 43451618 - 43451682
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||| | ||||||| ||||||||    
T  43451618 acaaaaaatcatacctcaaatcactaaatgttagttttcttaataagtatgaattagtatttttt 43451682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 38549688 - 38549622
Alignment:
Q  16 atacaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||| | ||||||    
T  38549688 atacaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattagtgtttttt 38549622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 792399 - 792335
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||| | ||||||    
T  792399 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattagtgtttttt 792335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 5091583 - 5091519
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||| |||||||||||||||||||||| ||||||||| | ||||||| ||||||||    
T  5091583 acaaaaaattatatctcaaatcactaagtgttagttttcttaataagtgtgaattagtatttttt 5091519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 15858732 - 15858668
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||||||||||| |||||| ||||||||||| ||||||| | ||||||    
T  15858732 acaaaaaattatacctcaaatcactaagtattagttttcttaataaatgtgaattagtgtttttt 15858668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 21539870 - 21539934
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||| | ||||||    
T  21539870 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattagtgtttttt 21539934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 35832525 - 35832589
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||| | ||||||    
T  35832525 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattagtgtttttt 35832589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 38071495 - 38071429
Alignment:
Q  16 atacaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||||| |||| ||||||||||||||||||||| ||||||||| | ||||||| | ||||||    
T  38071495 atacaaaaaattatacttcaaatcactaagtgttagttttcttaataagtgtgaattagtgtttttt 38071429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 4092124 - 4092169
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataa 63  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||    
T  4092124 acaaaaaattatacctcaaatcactaagtgttagttttcttaataa 4092169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 43075865 - 43075926
Alignment:
Q  21 aaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    |||||| | |||||||||||||||||||||||| ||||||||| | ||||||| ||||||||    
T  43075865 aaaaattacacctcaaatcactaagtgttagttttcttaataagtgtgaattagtatttttt 43075926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 44804011 - 44804068
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaat 75  Q
    ||||||||| ||||||||||||||||||||||| || ||||||||| | |||||||||    
T  44804011 acaaaaaattatacctcaaatcactaagtgttaattttcttaataagtgtgaattaat 44804068  T

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Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 10478291 - 10478355
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||| ||||| |||||||||||||||| ||||||||| | ||||||||| ||||||    
T  10478291 acaaaaaattatatctcaactcactaagtgttagttttcttaataagtgtgaattaatgtttttt 10478355  T

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Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 10979282 - 10979346
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||| | | ||||||| | ||||||    
T  10979282 acaaaaaattatacctcaaatcactaagtgttagttttcttaatgagtgtgaattagtgtttttt 10979346  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 29514518 - 29514454
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||| |||||||||||||| | ||||||| | ||||||| | ||||||    
T  29514518 acaaaaaattatacctcaaattactaagtgttagtttttttaataagtatgaattactgtttttt 29514454  T

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Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 38564756 - 38564705
Alignment:
Q  22 aaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaatta 73  Q
    ||||| ||||||||||||||||| |||||||| ||||||||| | |||||||    
T  38564756 aaaattatacctcaaatcactaaatgttagttttcttaataagtgtgaatta 38564705  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 28492633 - 28492678
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataa 63  Q
    ||||||||| ||| ||||||||| |||||||||||| |||||||||    
T  28492633 acaaaaaattatatctcaaatcattaagtgttagttttcttaataa 28492678  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 4033718 - 4033678
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctctt 58  Q
    ||||||||| ||||||||||||| |||||||||||| ||||    
T  4033718 acaaaaaattatacctcaaatcattaagtgttagttttctt 4033678  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 29514062 - 29513999
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||| ||||||||||| || ||||||||| | ||||||| | ||||||    
T  29514062 acaaaaaattatacctcaaattactaagtgtta-ttttcttaataagtgtgaattactgtttttt 29513999  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 33635449 - 33635513
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||| ||||||||||||| | |||||| ||||||||| | ||||||| | ||||||    
T  33635449 acaaaaaattatatctcaaatcactaaatattagttttcttaataagtgtgaattagtgtttttt 33635513  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 12278819 - 12278883
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | |||||| || ||||||    
T  12278819 acaaaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattgatgtttttt 12278883  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 17721853 - 17721789
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||||||||||| |||||| ||||||||| | ||||||||| ||||||    
T  17721853 acaaaaaattatacctcaaatcactaagtattagttttcttaataagtgtgaattaatgtttttt 17721789  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 30766559 - 30766623
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||| |||||||||||||||||||||| ||||||||| | ||||||| ||||||||    
T  30766559 acaaaaaattatatctcaaatcactaagtgttagttttcttaataagtgtgaattagtatttttt 30766623  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 10228028 - 10228089
Alignment:
Q  21 aaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    |||||| |||||||||||||||||||||||||| ||||||||| | ||||||| | ||||||    
T  10228028 aaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattagtgtttttt 10228089  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 374212 - 374276
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||| ||||||| |||||| | ||||||||| ||||||| | ||||||    
T  374212 acaaaaaattatacctcaaataactaagtattagtttttttaataaatgtgaattagtgtttttt 374276  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 5121500 - 5121436
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||  ||||||||||||| |||||||||||| ||||||||| | ||||||| | ||||||    
T  5121500 acaaaaaactatacctcaaatcattaagtgttagttttcttaataagtgtgaattagtgtttttt 5121436  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 30949248 - 30949312
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    ||||||||| ||||||||||||| ||| |||||||| | ||||||| | ||||||| ||||||||    
T  30949248 acaaaaaattatacctcaaatcaataaatgttagttttgttaataagtgtgaattagtatttttt 30949312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 17598406 - 17598450
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaata 62  Q
    ||||||||| ||||||||||||| ||||||||| || ||||||||    
T  17598406 acaaaaaattatacctcaaatcattaagtgttaattttcttaata 17598450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 31887165 - 31887101
Alignment:
Q  18 acaaaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    |||||||||||||  |||||||||| |||||||||| | ||||||| | | ||||||| ||||||    
T  31887165 acaaaaaatcatatatcaaatcactgagtgttagttttattaataagtgtaaattaatgtttttt 31887101  T

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Target: scaffold0495 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 4746 - 4807
Alignment:
Q  21 aaaaatcatacctcaaatcactaagtgttagttctcttaataaatttgaattaatatttttt 82  Q
    |||||| |||||||||||||||||||||||||| ||||||||| | ||||||| | ||||||    
T  4746 aaaaattatacctcaaatcactaagtgttagttttcttaataagtgtgaattagtgtttttt 4807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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