View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20298_low_15 (Length: 387)
Name: NF20298_low_15
Description: NF20298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20298_low_15 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 14 - 378
Target Start/End: Complemental strand, 125277 - 124913
Alignment:
| Q |
14 |
atatcaactttgttcaacatgtcaacttaaattattgtctgaaatgcatgtgcannnnnnnaaatgttttgtaaagtgaatgtgaaatcattgtaaaatg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
125277 |
atatcaactttgttcaacatgtcaacttaaattattgtttgaaatgcatgtgcatttttttaaatattttgtaaagtgaatgtgaaatcattgtaaaatg |
125178 |
T |
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| Q |
114 |
tcattgtcaacatgttttttacagcaacaatggctaggcctttccaaaaaattaacagcctcaatgattcaaaatctttgtggaaaattgctgttcgagt |
213 |
Q |
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| T |
125177 |
tcattgtcaacatgttttttacagcaacaatggctaggcctttccaaaaaattaacagcctcaatgattcaaaatctttgtggaaaattgctgttcgagt |
125078 |
T |
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| Q |
214 |
tgttgatttatggactgttggaaattcaaagaacaaacaacatattgagatggtggtgtgcgacaaagaggtgatttttagttcaccaaactatgttgtt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
125077 |
tgttgatttatggactgttggaaattcaaagaacaaacaacatattgagatggtggggtgcgacaaagaggtgatttttagttcaccaaactatgttgtt |
124978 |
T |
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| Q |
314 |
ggtttataatatattgttgttataacaagtattttttgtttgcttctaattgccataagaataat |
378 |
Q |
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| T |
124977 |
ggtttataatatattgttgttataacaagtattttttgtttgcttctaattgccataagaataat |
124913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 128 - 286
Target Start/End: Complemental strand, 22080028 - 22079870
Alignment:
| Q |
128 |
ttttttacagcaacaatggctaggcctttccaaaaaattaacagcctcaatgattcaaaatctttgtggaaaattgctgttcgagttgttgatttatgga |
227 |
Q |
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| T |
22080028 |
ttttttccagcaacaatggccaggcctttgcaaaagatcaagaacatcaatgatttcaaatctctgtggaaaattgctgttcgagttgttgacatgtgga |
22079929 |
T |
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| Q |
228 |
ctgttggaaattcaaagaacaaacaacatattgagatggtggtgtgcgacaaagaggtg |
286 |
Q |
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| T |
22079928 |
ctgttgcaaattcaaagaacaaacaacatattgagatggtgttgtgtgacaaagaggtg |
22079870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 135 - 285
Target Start/End: Complemental strand, 23700320 - 23700170
Alignment:
| Q |
135 |
cagcaacaatggctaggcctttccaaaaaattaacagcctcaatgattcaaaatctttgtggaaaattgctgttcgagttgttgatttatggactgttgg |
234 |
Q |
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|||||||||||||||||||||| ||||||| || | |||||||| ||| |||||| |||||||||||| |||||||||||||||||| ||||||||| |
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| T |
23700320 |
cagcaacaatggctaggcctttggaaaaaatcaagaacctcaatggttccaaatctctgtggaaaattgatgttcgagttgttgatttgtggactgttac |
23700221 |
T |
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| Q |
235 |
aaattcaaagaacaaacaacatattgagatggtggtgtgcgacaaagaggt |
285 |
Q |
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| T |
23700220 |
taattcaaagagcaaacaacatattgagatggtgttgtgtgacaaagaggt |
23700170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 139 - 286
Target Start/End: Original strand, 1522538 - 1522683
Alignment:
| Q |
139 |
aacaatggctaggcctttccaaaaaattaacagcctcaatgattcaaaatctttgtggaaaattgctgttcgagttgttgatttatggactgttggaaat |
238 |
Q |
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|||||||||||||||||| ||||| || || | |||||||||||| ||||| || |||||||| ||||||||||||||| | |||||||||| |||| |
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| T |
1522538 |
aacaatggctaggcctttgcaaaagatcaagaacctcaatgattccaaatccctg--gaaaattgttgttcgagttgttgacatgtggactgttgcaaat |
1522635 |
T |
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| Q |
239 |
tcaaagaacaaacaacatattgagatggtggtgtgcgacaaagaggtg |
286 |
Q |
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|||||||| ||||| ||||||||||||||| |||| |||||||||||| |
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| T |
1522636 |
tcaaagaagaaacagcatattgagatggtgttgtgtgacaaagaggtg |
1522683 |
T |
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