View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20298_low_17 (Length: 331)
Name: NF20298_low_17
Description: NF20298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20298_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 30 - 323
Target Start/End: Complemental strand, 35332858 - 35332561
Alignment:
| Q |
30 |
tgtcgagtcaatgactatgccaagttttaaaactatgtatttaatttataatattttctactagaacttgggtcccaataa----gaaacaacataaata |
125 |
Q |
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| T |
35332858 |
tgtcgagtcgatgactatgtcaagttttaaaactatgtatttaatttataatattttctactagaacttgggacccaataaataagaaacaacataaata |
35332759 |
T |
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| Q |
126 |
aatattgcaaaaagagtctttcgtttggaaaattataacaaacttgaggggttaaactgcaaagaaaagaatgtcactatcatcattgtttttgttctta |
225 |
Q |
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| T |
35332758 |
aatattgcaaaaagagtctttcatttggaaaattataacaaacttgaggggttaaactgcaaagaaaagaatgtcactatcatcattgtttttgttctta |
35332659 |
T |
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| Q |
226 |
ttgtacgcgccagaaacaaaaacctgagtgagaaaaacagtaagagtgagtcaaagtgccgtcttcaaacctacaaaatgcaaacatatgttcttctc |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35332658 |
ttgtacgcgccagaaacaaaaacctgagtgagaaaaacagtaagagtgagtcaaagtgccgtcttcaaacctacaaaatgcaaacatatgttcttctc |
35332561 |
T |
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