View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20298_low_18 (Length: 330)

Name: NF20298_low_18
Description: NF20298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20298_low_18
NF20298_low_18
[»] chr6 (1 HSPs)
chr6 (10-312)||(25520944-25521246)
[»] chr3 (1 HSPs)
chr3 (9-312)||(8524833-8525136)
[»] chr5 (9 HSPs)
chr5 (9-312)||(42125378-42125681)
chr5 (9-312)||(41711708-41712011)
chr5 (9-312)||(42130603-42130906)
chr5 (10-312)||(34230724-34231038)
chr5 (10-312)||(34238779-34239081)
chr5 (78-290)||(41569960-41570172)
chr5 (20-258)||(42118787-42119026)
chr5 (156-224)||(41433422-41433490)
chr5 (156-299)||(41446146-41446289)
[»] chr4 (1 HSPs)
chr4 (9-312)||(11120152-11120455)
[»] chr2 (1 HSPs)
chr2 (9-303)||(12250199-12250493)


Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 10 - 312
Target Start/End: Complemental strand, 25521246 - 25520944
Alignment:
Q  10 agatgaagtgattgtaatttagaaagatgtgagatttgagttggaattttacctttaaaggaactaccagacaagtaaagatgtgtaagactctgaaacc 109  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25521246 agatgaagtgattgtaatttggaaaggtgtgagatttgagttggaattttacctttaaagaaactaccagacaagtaaagatgtgtaagactctgaaacc 25521147  T
Q  110 caccaaacttagcatgaaaatgagagccagtgaaatcattgtaagaaaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaaa 209  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||| ||    
T  25521146 caccaaacttagcatgaaaatgggagccagtgaaatcattgtaagaaaggttgagtttttgaatatgagcaagatggaaaagagtactattaggatggaa 25521047  T
Q  210 tataccttgaaggccttcacagccaaggttgaggccaatcacgcgaccaaaagtggcgtcgcatgtgacaccatgccatgagcagcaatcagtctcatat 309  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  25521046 tataccttggaggccttcacagccaaggttgaggccaatcacgcgaccaaaagtggtgtcgcatgtgacaccatgccatgagcagcaatcagtcccatat 25520947  T
Q  310 ttc 312  Q
    |||    
T  25520946 ttc 25520944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 9 - 312
Target Start/End: Original strand, 8524833 - 8525136
Alignment:
Q  9 gagatgaagtgattgtaatttagaaagatgtgagatttgagttggaattttacctttaaaggaactaccagacaagtaaagatgtgtaagactctgaaac 108  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||||| |||||||| | |||||  |||||||| ||||||||| ||||||  ||||    
T  8524833 gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaggtaactatgagacaagtcaagatgtgtgagactcaaaaac 8524932  T
Q  109 ccaccaaacttagcatgaaaatgagagccagtgaaatcattgtaagaaaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaa 208  Q
    ||||||||||| | |||||||| |||||||| ||||||||||| || |||||||||||||| ||||| ||||||||| ||||| ||||| |||||||  |    
T  8524933 ccaccaaactttgaatgaaaataagagccagagaaatcattgttagcaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattga 8525032  T
Q  209 atataccttgaaggccttcacagccaaggttgaggccaatcacgcgaccaaaagtggcgtcgcatgtgacaccatgccatgagcagcaatcagtctcata 308  Q
     ||| |||||||| |||||||||||||||||||||||||||||| |||||    ||| ||| || |||||||||| |||||||||||||||| ||||||     
T  8525033 gtatgccttgaagaccttcacagccaaggttgaggccaatcacgtgaccactgatggtgtcacacgtgacaccatcccatgagcagcaatcaatctcatt 8525132  T
Q  309 tttc 312  Q
    ||||    
T  8525133 tttc 8525136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 9 - 312
Target Start/End: Original strand, 42125378 - 42125681
Alignment:
Q  9 gagatgaagtgattgtaatttagaaagatgtgagatttgagttggaattttacctttaaaggaactaccagacaagtaaagatgtgtaagactctgaaac 108  Q
    ||||||||||||||||||||| ||||| |||||||||||| ||||||||| |||||||||| |||||| |||||||| |||||||| |||||||  ||||    
T  42125378 gagatgaagtgattgtaatttggaaaggtgtgagatttgaattggaatttcacctttaaagaaactacgagacaagtcaagatgtgcaagactcataaac 42125477  T
Q  109 ccaccaaacttagcatgaaaatgagagccagtgaaatcattgtaagaaaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaa 208  Q
    ||||||||||||| |||||||||||||  || ||||||||||| ||||||||||||| ||| || |||| ||||||  ||||| ||||| |||||||| |    
T  42125478 ccaccaaacttagaatgaaaatgagagtaagagaaatcattgttagaaaggttgagtgtttgaagatgaacaagattgaaaagggtactgttaggatgta 42125577  T
Q  209 atataccttgaaggccttcacagccaaggttgaggccaatcacgcgaccaaaagtggcgtcgcatgtgacaccatgccatgagcagcaatcagtctcata 308  Q
     | ||||||||||||||||||||||||| ||||||||||||||| ||| |    |||  || || |||||||||| ||||||||||||||||||| |||     
T  42125578 gtttaccttgaaggccttcacagccaagattgaggccaatcacgtgacgagtgatggtatcacacgtgacaccattccatgagcagcaatcagtcccatt 42125677  T
Q  309 tttc 312  Q
    ||||    
T  42125678 tttc 42125681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 9 - 312
Target Start/End: Complemental strand, 41712011 - 41711708
Alignment:
Q  9 gagatgaagtgattgtaatttagaaagatgtgagatttgagttggaattttacctttaaaggaactaccagacaagtaaagatgtgtaagactctgaaac 108  Q
    ||||||||||||||||||||| || || |||||||||||| ||||||||| ||||| |||| |||||  ||||| || |||||||| |||||||  ||||    
T  41712011 gagatgaagtgattgtaatttggagaggtgtgagatttgaattggaatttcaccttcaaagtaactataagacatgtcaagatgtgcaagactcaaaaac 41711912  T
Q  109 ccaccaaacttagcatgaaaatgagagccagtgaaatcattgtaagaaaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaa 208  Q
    | ||||||||||| ||||||||| |||  || ||||||||||||||||||||||||| |||  | |||| ||||||| ||||| ||| |||||||||| |    
T  41711911 cgaccaaacttagaatgaaaatgggagtaagagaaatcattgtaagaaaggttgagtgtttggagatgaacaagatggaaaagagtattattaggatgga 41711812  T
Q  209 atataccttgaaggccttcacagccaaggttgaggccaatcacgcgaccaaaagtggcgtcgcatgtgacaccatgccatgagcagcaatcagtctcata 308  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||| |   || ||| |||||||||||  |||||||||| |||||||||||||     
T  41711811 atataccttgaaggccatcacagccaaggttgaggccaaccacgcgaccatagacggtgtcacatgtgacaccgggccatgagcaacaatcagtctcatt 41711712  T
Q  309 tttc 312  Q
    ||||    
T  41711711 tttc 41711708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 9 - 312
Target Start/End: Original strand, 42130603 - 42130906
Alignment:
Q  9 gagatgaagtgattgtaatttagaaagatgtgagatttgagttggaattttacctttaaaggaactaccagacaagtaaagatgtgtaagactctgaaac 108  Q
    ||||||||||||||||||||| || || || ||||||||||||||||||| |||||  |||  |||| ||||||||| |||||||||||||||||||||     
T  42130603 gagatgaagtgattgtaatttggataggtgagagatttgagttggaatttcaccttctaagttactatcagacaagtcaagatgtgtaagactctgaaat 42130702  T
Q  109 ccaccaaacttagcatgaaaatgagagccagtgaaatcattgtaagaaaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaa 208  Q
    |||| |||||||  ||||||||||||| ||  ||||||||||||||||||||||||| |||  | |||| ||||||||||||| |||||||||||||  |    
T  42130703 ccacaaaacttataatgaaaatgagagtcaaagaaatcattgtaagaaaggttgagtgtttggagatgaacaagatgaaaaagggtactattaggattga 42130802  T
Q  209 atataccttgaaggccttcacagccaaggttgaggccaatcacgcgaccaaaagtggcgtcgcatgtgacaccatgccatgagcagcaatcagtctcata 308  Q
    || |||||  ||||||||||||||||||||||||| |||||||| ||||| |    | ||| || ||||| |||| ||||||||||||||||||| |||     
T  42130803 atgtacctgtaaggccttcacagccaaggttgaggtcaatcacgtgaccagagactgtgtcacacgtgacgccattccatgagcagcaatcagtcccatt 42130902  T
Q  309 tttc 312  Q
    ||||    
T  42130903 tttc 42130906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 10 - 312
Target Start/End: Complemental strand, 34231038 - 34230724
Alignment:
Q  10 agatgaagtgattgtaatttagaaagatgtgagatttgagttggaattttacctttaaaggaactaccagacaagtaaagatgtgtaagactctgaaacc 109  Q
    |||||||||||||||||||| ||||| |  ||||||||||  ||||||| | ||| |||| ||| |  ||||||||  |||||||||||||||  |||||    
T  34231038 agatgaagtgattgtaatttggaaaggtccgagatttgagaaggaatttcatcttgaaagaaacaagaagacaagtcgagatgtgtaagactcataaacc 34230939  T
Q  110 caccaaacttagcatgaaaatgagagccagtgaaatc------------attgtaagaaaggttgagttttttaatatgagcaagatgaaaaagtgtact 197  Q
    | |||||||||| ||||||||| ||||||| ||||||            |||||  |||||||||||  ||| ||  ||||||||||| ||||| |||||    
T  34230938 cgccaaacttagaatgaaaatgggagccagagaaatcgttagagaaataattgttcgaaaggttgagcatttgaaggtgagcaagatggaaaagggtact 34230839  T
Q  198 attaggatgaaatataccttgaaggccttcacagccaaggttgaggccaatcacgcgaccaaaagtggcgtcgcatgtgacaccatgccatgagcagcaa 297  Q
    ||||||||| | ||||||||||| |||||||||||||||||| |||||||| ||| ||||| |   || ||| || ||||||||||||||||||||||||    
T  34230838 attaggatggagtataccttgaaagccttcacagccaaggttaaggccaatgacgtgaccagatacggtgtcacacgtgacaccatgccatgagcagcaa 34230739  T
Q  298 tcagtctcatatttc 312  Q
    |||||| ||| ||||    
T  34230738 tcagtcccatttttc 34230724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 10 - 312
Target Start/End: Complemental strand, 34239081 - 34238779
Alignment:
Q  10 agatgaagtgattgtaatttagaaagatgtgagatttgagttggaattttacctttaaaggaactaccagacaagtaaagatgtgtaagactctgaaacc 109  Q
    |||||||||||||||||||| ||||| | |||||||||||  ||||||| |||   ||    | ||  |||||||| ||||||||||||||||  |||||    
T  34239081 agatgaagtgattgtaatttggaaaggtatgagatttgagaaggaatttcaccgccaacatgagtattagacaagtcaagatgtgtaagactcgtaaacc 34238982  T
Q  110 caccaaacttagcatgaaaatgagagccagtgaaatcattgtaagaaaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaaa 209  Q
      |||||||||| || |||||  || |||  |||| |||||| ||||||||||||| |||  | |||| ||| ||  ||||| |||||||||||||| |     
T  34238981 tgccaaacttagaatcaaaataggaaccatagaaaccattgttagaaaggttgagtgtttggagatgaacaatattgaaaagggtactattaggatggag 34238882  T
Q  210 tataccttgaaggccttcacagccaaggttgaggccaatcacgcgaccaaaagtggcgtcgcatgtgacaccatgccatgagcagcaatcagtctcatat 309  Q
    ||||||||||| ||||||||| |||||||| |||||||| ||| ||||| |   || ||| || |||||||||||||||||||||||||||||| ||| |    
T  34238881 tataccttgaaagccttcacaaccaaggttaaggccaatgacgtgaccagatacggtgtcacacgtgacaccatgccatgagcagcaatcagtcccattt 34238782  T
Q  310 ttc 312  Q
    |||    
T  34238781 ttc 34238779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 78 - 290
Target Start/End: Complemental strand, 41570172 - 41569960
Alignment:
Q  78 agacaagtaaagatgtgtaagactctgaaacccaccaaacttagcatgaaaatgagagccagtgaaatcattgtaagaaaggttgagttttttaatatga 177  Q
    |||||||| ||||||||||||||||| ||| |||||||||| || ||| ||||  |||     ||||||||||| |||||||||||||  ||  | ||||    
T  41570172 agacaagtcaagatgtgtaagactcttaaatccaccaaactgagaatgcaaattggagttgaagaaatcattgtgagaaaggttgagtgattggagatga 41570073  T
Q  178 gcaagatgaaaaagtgtactattaggatgaaatataccttgaaggccttcacagccaaggttgaggccaatcacgcgaccaaaagtggcgtcgcatgtga 277  Q
    |||||||||||||| ||  | ||||||| || | |||||||||||| |||||||||||||| ||| ||||||||||||||| |    |||||||| ||||    
T  41570072 gcaagatgaaaaagagtgttgttaggataaattttaccttgaaggcattcacagccaaggtcgagaccaatcacgcgaccagagacagcgtcgcacgtga 41569973  T
Q  278 caccatgccatga 290  Q
    |||||||||||||    
T  41569972 caccatgccatga 41569960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 42118787 - 42119026
Alignment:
Q  20 attgtaatttagaaagatgtgagatttgagttggaattttacctttaaaggaa-ctaccagacaagtaaagatgtgtaagactctgaaacccaccaaact 118  Q
    |||||||||| || |  |||||||||||||||||||||| |||||||||| || |||  |||||||| ||||||||||||||||  ||| ||||||||||    
T  42118787 attgtaatttggataagtgtgagatttgagttggaatttcacctttaaagaaaactatgagacaagtcaagatgtgtaagactcaaaaaaccaccaaact 42118886  T
Q  119 tagcatgaaaatgagagccagtgaaatcattgtaagaaaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaaatataccttg 218  Q
    ||| ||||||| ||||  | | ||||| |||| | | |||||| ||| |||  | |||| ||||||| ||||| ||| | |||||||| ||| ||||       
T  42118887 tagaatgaaaacgagaagcggagaaattattggatgcaaggtttagtgtttggagatgaacaagatggaaaagggtattgttaggatgtaatttaccagt 42118986  T
Q  219 aaggccttcacagccaaggttgaggccaatcacgcgacca 258  Q
    ||||| || | ||||||||||||| ||||||||| |||||    
T  42118987 aaggcgttaaaagccaaggttgagaccaatcacgtgacca 42119026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 41433422 - 41433490
Alignment:
Q  156 aaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaaatataccttgaaggcc 224  Q
    |||||||||| |||  | ||||| |||||||||||||||||| || |||||||  ||||||||||||||    
T  41433422 aaggttgagtgtttggagatgagaaagatgaaaaagtgtactgttgggatgaatcataccttgaaggcc 41433490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 299
Target Start/End: Original strand, 41446146 - 41446289
Alignment:
Q  156 aaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaaatataccttgaaggccttcacagccaaggttgaggccaatcacgcga 255  Q
    |||||||||| |||  | ||||| |||||||||||||||||| || |||||||  |||||||||||| | |  ||||  ||||  | |||||| ||| ||    
T  41446146 aaggttgagtgtttggagatgagaaagatgaaaaagtgtactgttgggatgaataataccttgaaggtcattgcagctgaggtctaagccaattacgtga 41446245  T
Q  256 ccaaaagtggcgtcgcatgtgacaccatgccatgagcagcaatc 299  Q
    ||| || | | ||| || ||||||||| |||||||||| |||||    
T  41446246 ccagaaattgtgtcacaggtgacaccaagccatgagcaacaatc 41446289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 9 - 312
Target Start/End: Original strand, 11120152 - 11120455
Alignment:
Q  9 gagatgaagtgattgtaatttagaaagatgtgagatttgagttggaattttacctttaaaggaactaccagacaagtaaagatgtgtaagactctgaaac 108  Q
    ||||| ||| ||||||||||| ||||||| |||||||||||||||||||| ||| | || |  ||||  |||||||||||||||||||||||||||||||    
T  11120152 gagataaagggattgtaatttggaaagatatgagatttgagttggaatttcaccataaatgttactataagacaagtaaagatgtgtaagactctgaaac 11120251  T
Q  109 ccaccaaacttagcatgaaaatgagagccagtgaaatcattgtaagaaaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaa 208  Q
    ||||||||||||| ||||||| ||||||| | ||||| ||||||   |||||||||| |||  | |||| ||||||| ||||| |||||||| ||||| |    
T  11120252 ccaccaaacttagaatgaaaacgagagccggagaaattattgtatacaaggttgagtgtttggagatgaacaagatggaaaagggtactattcggatgta 11120351  T
Q  209 atataccttgaaggccttcacagccaaggttgaggccaatcacgcgaccaaaagtggcgtcgcatgtgacaccatgccatgagcagcaatcagtctcata 308  Q
    |||| |||||||| |||||||||||||| ||||||||||||||||||||| |  ||| |||||| |||||||||| ||||||||||||||||||| |||     
T  11120352 atatgccttgaagaccttcacagccaagattgaggccaatcacgcgaccagagatggtgtcgcacgtgacaccattccatgagcagcaatcagtcccatt 11120451  T
Q  309 tttc 312  Q
    ||||    
T  11120452 tttc 11120455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 9 - 303
Target Start/End: Original strand, 12250199 - 12250493
Alignment:
Q  9 gagatgaagtgattgtaatttagaaagatgtgagatttgagttggaattttacctttaaaggaactaccagacaagtaaagatgtgtaagactctgaaac 108  Q
    |||||||||||||| |||||| ||||| ||||||||||||||||||| || |||||||||| |||||  |||||||| ||||||||||||| |    ||     
T  12250199 gagatgaagtgattctaatttggaaaggtgtgagatttgagttggaacttcacctttaaagaaactattagacaagtcaagatgtgtaagattaaagaat 12250298  T
Q  109 ccaccaaacttagcatgaaaatgagagccagtgaaatcattgtaagaaaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaa 208  Q
    ||||||||||||| ||||||||| |||   | |||||||||| |||||||||||||| |||  | |||||||||||  ||||| ||||||||||| || |    
T  12250299 ccaccaaacttagaatgaaaatgggagtttgagaaatcattggaagaaaggttgagtgtttggagatgagcaagatcgaaaagggtactattaggttgta 12250398  T
Q  209 atataccttgaaggccttcacagccaaggttgaggccaatcacgcgaccaaaagtggcgtcgcatgtgacaccatgccatgagcagcaatcagtc 303  Q
    ||||||| | ||||||||||  |||||||| ||||||||||||  ||||| |  | | ||| |||||||||||||||||||||||||||||||||    
T  12250399 atataccatcaaggccttcatcgccaaggtcgaggccaatcacatgaccatagattgtgtcacatgtgacaccatgccatgagcagcaatcagtc 12250493  T

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