View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20298_low_2 (Length: 800)
Name: NF20298_low_2
Description: NF20298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20298_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 752; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 752; E-Value: 0
Query Start/End: Original strand, 10 - 785
Target Start/End: Complemental strand, 18571993 - 18571218
Alignment:
| Q |
10 |
cgaagaatatccaatagaacattaacattagaagcacaatcaagaccaggtttagtttgacaaaaggaattagaatcataagatacttttgcagccttaa |
109 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18571993 |
cgaagaaaatccaatagaacattaacattagaagcacaatcaagaccaggtttagtttgacaaaaggaattagaatcataagatacttttgcagccttaa |
18571894 |
T |
|
| Q |
110 |
actttggtattggacccataaacatattattatttaacacaagtaacttaagatccatatttgccaatgaatttggaatcaaacctacaagtttattacc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
18571893 |
actttggtattggacccataaacatattattatttaacacaagtaacttaagatccatatttgccaatgaatatggaatcaaacctacaagtttattacc |
18571794 |
T |
|
| Q |
210 |
attgaggttaagctcttgcagtgcagtcaaattcccgatattcgacggaattgttccgctgaacttgtttccatgtaaccaaacctgtctcaaatatgtc |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18571793 |
attgaggttaagctcttgcagtgcagtcaaatttccaatattcgatggaattgttccgctgaacttgtttccatgtaaccaaacctgtctcaaatatgtc |
18571694 |
T |
|
| Q |
310 |
attgaagcaataacatcaatagaacctgtcattccagcaccttgttgatcattcaaccacagaacctgaatcgaagattgaccgaaactaaccggaattt |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18571693 |
attgaagcaataacatcaatagaacctgtcattccagcaccttgttgatcattcaaccacagaacctgaatcgaagattgaccgaaactaaccggaattt |
18571594 |
T |
|
| Q |
410 |
cacccgaaagtctgttacctgaaagcctcaaatttgacaaagaagacaatgtgcctagaaactcaggtaatggaccaaccaaattacaattcaccaaaga |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18571593 |
cacccgaaagtctgttacctgaaagcctcaaatttgacaaagaagacaatgtgcctagaaactcaggtaatggaccaaccaaattacaattcaccaaaga |
18571494 |
T |
|
| Q |
510 |
aagatttgttaattgagctgaatttttcaagtccaatggaaataaccaaccattagtagcattcaaagggttttcttccaaagacaaaacctgaatatta |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18571493 |
aagatttgttaattgagctgaatttttcaagtccaatggaaataaccaaccattagtagcattcaaagggttttcttccaaagacaaaacctgaatatta |
18571394 |
T |
|
| Q |
610 |
tcaagtccattgaagaaatcaacaggaattgcatcaaattcattgtaatccaaaaaagcatattgcaaattggataatccactaaaactaggtaacattc |
709 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18571393 |
tcaagtccattgaagaaatcaacagggattgcatcaaattcattgtaatccaaaaaagcatattgcaaattggataatccactaaaactaggtaacattc |
18571294 |
T |
|
| Q |
710 |
cactaagattatttctttgaagacctaaattctgaagctctgaaagctggttaaaatttgaaggcaatgaaccttt |
785 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18571293 |
cactaagattatttctttgaagacctaaattctgaagctctgaaagctggttaaaatttgaaggcaatgaaccttt |
18571218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 2e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 97 - 740
Target Start/End: Original strand, 36662900 - 36663549
Alignment:
| Q |
97 |
tttgcagccttaaactttggtattggacccataaacatattattatttaacacaagtaacttaagatccatatttgccaatgaatttggaatcaaaccta |
196 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| | ||||||||| || || |||||||| | ||||| ||| | ||| || || | ||||||||| || | |
|
|
| T |
36662900 |
tttgcagctttaaactttggtattggacccattagcatattattgttcaaaacaagtaaatcaagattcatttctgctaaggattgtggaatcaacccaa |
36662999 |
T |
|
| Q |
197 |
caagtttattaccattgaggttaagctcttgcagtgcagtcaaattcccgatattcgacggaattgttccgctgaacttgtttccatgtaaccaaacctg |
296 |
Q |
| |
|
||| || ||| | ||||| || || || | || | ||| | ||| || ||||| | |||||||| || |||||||||||||||| ||||| ||| |
|
|
| T |
36663000 |
caaattgattgctattgacattgagttccttcaaagaagtgagatttccaatattgtatggaattgtacctgaaaacttgtttccatgtagccaaatctg |
36663099 |
T |
|
| Q |
297 |
tctcaaatatgtcattgaagcaataacatcaatagaacctgtcattccagca---ccttgttgatcattcaaccacagaacctgaatcgaagattgaccg |
393 |
Q |
| |
|
| | || | ||||||||||||||||||||| |||||||| | ||| | |||| ||| | ||||||||||||||||||||| ||||||||| | |
|
|
| T |
36663100 |
tgttaagaaaaccattgaagcaataacatcaattgaacctgtaaaaccaccttctccttcttggttattcaaccacagaacctgaattgaagattgagca |
36663199 |
T |
|
| Q |
394 |
aaactaaccggaatttcacccgaaagtctgttacctgaaagcctcaaatttgacaaagaagacaatgtgcctagaaactcaggtaatggaccaaccaaat |
493 |
Q |
| |
|
||| || ||||||| |||||||| | |||| ||||||||| | ||||| | ||| | ||||||||||||||| ||||| |||| ||||||||||| |
|
|
| T |
36663200 |
aaagtagccggaatcggacccgaaaatttgttgtttgaaagccttagatttgtgagagatggcaatgtgcctagaaaatcaggcaatgaaccaaccaaat |
36663299 |
T |
|
| Q |
494 |
tacaattcaccaaagaaagatttgttaattgagctgaatttttcaagtccaatggaaataaccaaccattag---tagcattcaaagggttttcttccaa |
590 |
Q |
| |
|
|||||| |||||||||||||| ||||| ||| | || |||| ||| ||||| ||||||||||| ||||||| || |||| | | ||||| ||||| |
|
|
| T |
36663300 |
tacaatgaaccaaagaaagattagttaactgaaccgatttttccaaatccaaaggaaataaccatccattagtactaacattgagttgattttcctccaa |
36663399 |
T |
|
| Q |
591 |
agacaaaa-cctgaatattatcaagtccattgaagaaatcaacaggaattgcatcaaattcattgtaatccaaaaaagcatattgcaaattggataatcc |
689 |
Q |
| |
|
|||||||| ||| | || | || ||||||||||||||||| ||| || || |||||| |||||||||||| ||||| ||| ||| || ||||| || |
|
|
| T |
36663400 |
agacaaaaccctaaggcttgttaa-tccattgaagaaatcaaaagggatagcttcaaatgaattgtaatccaagaaagcgaattccaattttgataaacc |
36663498 |
T |
|
| Q |
690 |
actaaaactaggtaacattccactaagattatttctttgaagacctaaatt |
740 |
Q |
| |
|
| ||||||||| |||||||| ||||||| |||| ||||||||||||||| |
|
|
| T |
36663499 |
gcgaaaactaggcaacattccggtaagattgtttcgttgaagacctaaatt |
36663549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University