View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20298_low_21 (Length: 306)
Name: NF20298_low_21
Description: NF20298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20298_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 15537093 - 15537371
Alignment:
| Q |
18 |
agttaacagattgtatgaatgtcttcataggttccctccactcagttaaatttgtaccatcgaagtatggtggctttgaaacggatcttccttcaacaat |
117 |
Q |
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| T |
15537093 |
agttaacagattgtatgaatgtcttcataggttccctccactcagttaaatttgtaccatcgaagtatggtggctttgaaacggatcttccttcaacaat |
15537192 |
T |
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| Q |
118 |
aattgcgttcataacttttttagttgtattaattacctgcaatgaataaagttcaattgcatctggagaaaaagcaatctttttagctaatctcaaacca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15537193 |
aattgcgttcataacttttttagttgtattaattacctgcaatgaataaagttcaattgcatctggagaaaaagcaatctttttagctaatctcaaacca |
15537292 |
T |
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| Q |
218 |
agaacaaagccctagaattattccaacacagaagtaccatgattgaggttgcgtaaataaatctttatttcgtgttcat |
296 |
Q |
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| T |
15537293 |
agaacaaagccctagaattattccaacacagaagtaccatgattgaggttgcgtaaataaatctttatttcgtgttcat |
15537371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 22 - 144
Target Start/End: Original strand, 15524016 - 15524138
Alignment:
| Q |
22 |
aacagattgtatgaatgtcttcataggttccctccactcagttaaatttgtaccatcgaagtatggtggctttgaaacggatcttccttcaacaataatt |
121 |
Q |
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| T |
15524016 |
aacagattgtatgaatatcttcataagttccctccactcagttaaatttgtaccatcaaagtatggtggctttgaaatggatcttccttcaaccatcgtt |
15524115 |
T |
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| Q |
122 |
gcgttcataacttttttagttgt |
144 |
Q |
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| T |
15524116 |
gcgttcgtaacttttttagttgt |
15524138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 194 - 277
Target Start/End: Original strand, 15525255 - 15525338
Alignment:
| Q |
194 |
atctttttagctaatctcaaaccaagaacaaagccctagaattattccaacacagaagtaccatgattgaggttgcgtaaataa |
277 |
Q |
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| T |
15525255 |
atctttttagccaatctcaaaccaagaataaagccctagaattatgccaacacagaagtaccatgattgaggttgcataaataa |
15525338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 15649138 - 15649184
Alignment:
| Q |
68 |
tttgtaccatcgaagtatggtggctttgaaacggatcttccttcaac |
114 |
Q |
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| T |
15649138 |
tttgtaccatcgaagtatggtggctttgaaatggatcttccttcaac |
15649184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 15658386 - 15658431
Alignment:
| Q |
68 |
tttgtaccatcgaagtatggtggctttgaaacggatcttccttcaa |
113 |
Q |
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| T |
15658386 |
tttgtaccatcgaagtatggtggctttgaaatggatcttccttcaa |
15658431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 15611457 - 15611545
Alignment:
| Q |
26 |
gattgtatgaatgtcttcataggttccctccactcagttaaatttgt---accatcgaagtatggtggctttgaaacggatcttccttc |
111 |
Q |
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| T |
15611457 |
gattgtatgaatatctttatacgctccttccactcagtacaatttgttgtaccatcgaagtatggtggctttgaaatggatctcccttc |
15611545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 15628588 - 15628630
Alignment:
| Q |
69 |
ttgtaccatcgaagtatggtggctttgaaacggatcttccttc |
111 |
Q |
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| T |
15628588 |
ttgtaccatcgaagtatggtggctttgaaatggatctcccttc |
15628630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 15504506 - 15504546
Alignment:
| Q |
72 |
taccatcgaagtatggtggctttgaaacggatcttccttca |
112 |
Q |
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| T |
15504506 |
taccatcgaagaatggtggctttgaaatggatcgtccttca |
15504546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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