View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20298_low_22 (Length: 294)
Name: NF20298_low_22
Description: NF20298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20298_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 159 - 284
Target Start/End: Original strand, 37113320 - 37113445
Alignment:
| Q |
159 |
ttacctcttctgaccaccagcataatactcctgaggttcatcagactcagaatcagaatcttgatcgcgtttcacatcacgcaaagtccgaatcccactt |
258 |
Q |
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| T |
37113320 |
ttacctcttctgaccaccagcataatactcctgaggttcatcagactcagaatcagaatcttgatcgcgtttcacatcacgcaaagtccgaatcccactt |
37113419 |
T |
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| Q |
259 |
tgccgactaccagaaccgcttttctt |
284 |
Q |
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| T |
37113420 |
tggcgactaccagaaccgcttttctt |
37113445 |
T |
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Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 37113178 - 37113269
Alignment:
| Q |
15 |
aaaaagaaacaaaatctcaaaattcacaaaacctaaacctaatatcacaattaatcattatcaatttcccgaaacaataacacacattttca |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37113178 |
aaaaagaaacaaaatctcaaaattcacaaaacctaaacctaatatcacaattaatcattatcaatttcccgaaacaataacacacattttca |
37113269 |
T |
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