View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20298_low_26 (Length: 251)

Name: NF20298_low_26
Description: NF20298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20298_low_26
NF20298_low_26
[»] chr3 (4 HSPs)
chr3 (12-251)||(33328141-33328382)
chr3 (95-175)||(36326512-36326593)
chr3 (87-160)||(30912069-30912142)
chr3 (125-175)||(14029379-14029430)
[»] chr6 (6 HSPs)
chr6 (87-223)||(4834733-4834865)
chr6 (92-223)||(7415658-7415785)
chr6 (92-175)||(7422666-7422750)
chr6 (87-163)||(33242862-33242938)
chr6 (92-167)||(7426605-7426680)
chr6 (124-245)||(13886592-13886706)
[»] chr7 (3 HSPs)
chr7 (87-175)||(42513109-42513198)
chr7 (102-175)||(11206500-11206574)
chr7 (95-175)||(49017149-49017230)
[»] chr5 (3 HSPs)
chr5 (87-168)||(8123542-8123623)
chr5 (96-175)||(41709523-41709603)
chr5 (95-158)||(24108720-24108783)
[»] chr1 (2 HSPs)
chr1 (87-163)||(18583946-18584022)
chr1 (86-175)||(23405522-23405612)
[»] chr8 (3 HSPs)
chr8 (102-163)||(14276621-14276683)
chr8 (86-245)||(44761980-44762132)
chr8 (86-175)||(44765287-44765377)
[»] chr4 (2 HSPs)
chr4 (102-163)||(24733645-24733706)
chr4 (95-163)||(55322394-55322463)
[»] chr2 (1 HSPs)
chr2 (86-163)||(45327464-45327541)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 33328141 - 33328382
Alignment:
Q  12 ttattctagaagggatctatcaggtatattctattggttagttactaattgctattgt--gtagccattgaacaaatgtatgcataagtctgtataagca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  33328141 ttattctagaagggatctatcaggtatattctattggttagttactaattgctattgtacgtagccattgaacaaatgtatgcataagtctgtataagca 33328240  T
Q  110 ttgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttcttagtttctttctataaattcaattctggagtgggattcctac 209  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||    
T  33328241 ttgtatgctttataattagaaccaatgaaagatataatcaatttcctttcttttttcttagtttctttctataaattcaattatggtgtgggatccctac 33328340  T
Q  210 tcaaattggatcgtcgtattatttggttctttcatttagatc 251  Q
    || ||||||||||| |||||| ||||| ||||||||||||||    
T  33328341 tcgaattggatcgttgtattagttggtgctttcatttagatc 33328382  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 95 - 175
Target Start/End: Original strand, 36326512 - 36326593
Alignment:
Q  95 aagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttct 175  Q
    |||||| ||||||||||||||||||||| || ||||||||||||| ||||||| ||||| |||||| |||||| ||||||||    
T  36326512 aagtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattttctttctcttttctctagtttct 36326593  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 160
Target Start/End: Original strand, 30912069 - 30912142
Alignment:
Q  87 gtatgcataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttct 160  Q
    ||||||| |||||| |||||| ||||||||| |||| || ||||||||||||| ||||||| ||||| ||||||    
T  30912069 gtatgcacaagtctatataagtattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttct 30912142  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 14029379 - 14029430
Alignment:
Q  125 ttagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttct 175  Q
    ||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||    
T  14029379 ttagaatcaatgaaaaatataatgaatttcctttcttttatctctagtttct 14029430  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 87 - 223
Target Start/End: Original strand, 4834733 - 4834865
Alignment:
Q  87 gtatgcataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttctttctataaat 185  Q
    |||||||||||||| |||||||||||||||| | || |||||||||||||||| ||||||| ||||| |||||| |||||| ||||||||  || ||       
T  4834733 gtatgcataagtctatataagcattgtatgcctcattattagaatcaatgaaaaatataatgaattttctttctcttttctctagtttctccctcta--- 4834829  T
Q  186 tcaattctggagtgggattcctactcaaattggatcgt 223  Q
      |||||||||||| ||| |||||||||||||| ||||    
T  4834830 --aattctggagtgtgatccctactcaaattgggtcgt 4834865  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 92 - 223
Target Start/End: Original strand, 7415658 - 7415785
Alignment:
Q  92 cataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttctttctataaattcaat 190  Q
    ||||||||| |||||||||||||||| |||| || ||||||||||||| ||||||| ||||| |||||| |||||| |||||||| ||| ||     | |    
T  7415658 cataagtctatataagcattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttctctagtttctctctcta-----att 7415752  T
Q  191 tctggagtgggattcctactcaaattggatcgt 223  Q
    ||||||||| ||| ||||||||| |||||||||    
T  7415753 tctggagtgtgatccctactcaagttggatcgt 7415785  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 175
Target Start/End: Original strand, 7422666 - 7422750
Alignment:
Q  92 cataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttct 175  Q
    ||||||||| |||||||||||||||| |||| || ||||||||||||| ||||||| ||||| |||||| |||||| ||||||||    
T  7422666 cataagtctatataagcattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttctctagtttct 7422750  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 33242862 - 33242938
Alignment:
Q  87 gtatgcataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttctttt 163  Q
    ||||||| |||||| |||||||||||||||| |||| || ||||||||||||| ||||||| |||||| ||||||||    
T  33242862 gtatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaaatataatgaatttcttttctttt 33242938  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 7426605 - 7426680
Alignment:
Q  92 cataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct 167  Q
    ||||||||| ||||| |||||||||| |||| || ||||||||||||| ||||||| ||||| |||||| ||||||    
T  7426605 cataagtctatataaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttct 7426680  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 245
Target Start/End: Original strand, 13886592 - 13886706
Alignment:
Q  124 attagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttctttctataaattcaattctggagtgggattcctactcaaattggatcg 222  Q
    |||||||||||||||| ||||||| ||||| |||||| |||||| ||||||||  || ||     |||||||||||| ||| ||||||||||||||   |    
T  13886592 attagaatcaatgaaaaatataatgaattttctttctcttttctctagtttctccctcta-----aattctggagtgtgatccctactcaaattgg---g 13886683  T
Q  223 tcgtattatttggttctttcatt 245  Q
    |||||| ||||||| ||||||||    
T  13886684 tcgtatcatttggtgctttcatt 13886706  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 175
Target Start/End: Complemental strand, 42513198 - 42513109
Alignment:
Q  87 gtatgcataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttct 175  Q
    ||||||| |||||| ||||||||||||||||||||| || ||||||||||||| ||||||| ||||| |||||| |||||| ||||||||    
T  42513198 gtatgcacaagtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattttctttctcttttctctagtttct 42513109  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 11206500 - 11206574
Alignment:
Q  102 tataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttct 175  Q
    ||||| |||||||||| |||| || ||||||||||||| ||||||| ||||| |||||| |||||| ||||||||    
T  11206500 tataaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttctctagtttct 11206574  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 175
Target Start/End: Original strand, 49017149 - 49017230
Alignment:
Q  95 aagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttct 175  Q
    |||| |||||||||||||||||| |||| || ||| | ||||||| |||||||  |||| ||||||||| ||| ||||||||    
T  49017149 aagtttgtataagcattgtatgccttattatgagacttaatgaaaaatataatatattttctttcttttatctctagtttct 49017230  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 168
Target Start/End: Original strand, 8123542 - 8123623
Alignment:
Q  87 gtatgcataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttctt 168  Q
    ||||||| |||||| ||||||||||||||||||||| || ||||||||||||| ||||||| ||||| |||||| |||||||    
T  8123542 gtatgcacaagtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattttctttctcttttctt 8123623  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 175
Target Start/End: Original strand, 41709523 - 41709603
Alignment:
Q  96 agtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttct 175  Q
    ||||| ||||| |||||||||| |||| || ||||||||||||| ||||||| ||||| |||||| |||||| ||||||||    
T  41709523 agtctatataaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttctatagtttct 41709603  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 158
Target Start/End: Original strand, 24108720 - 24108783
Alignment:
Q  95 aagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttccttt 158  Q
    |||||| |||||||||||||||  |||| ||||||| |||||||| ||||||| ||||||||||    
T  24108720 aagtctatataagcattgtatgtcttatgattagaaccaatgaaaaatataatgaatttccttt 24108783  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 18584022 - 18583946
Alignment:
Q  87 gtatgcataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttctttt 163  Q
    ||||||| |||||| ||||||||||||||||||||| || ||||||||||||| ||||| | |||||||||||||||    
T  18584022 gtatgcacaagtctatataagcattgtatgctttattatgagaatcaatgaaaaatatactgaatttcctttctttt 18583946  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 175
Target Start/End: Complemental strand, 23405612 - 23405522
Alignment:
Q  86 tgtatgcataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttct 175  Q
    |||||||| |||||| | ||| |||||||||| |||| || ||||||||||||| ||||||| ||||| |||||| |||||| ||||||||    
T  23405612 tgtatgcacaagtctatctaaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttctctagtttct 23405522  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 163
Target Start/End: Complemental strand, 14276683 - 14276621
Alignment:
Q  102 tataagcattgta-tgctttataattagaatcaatgaaagatataatcaatttcctttctttt 163  Q
    ||||||||||||| ||||| || |||| ||||||||||| |||||||||||||||||||||||    
T  14276683 tataagcattgtaatgcttcatgattaaaatcaatgaaaaatataatcaatttcctttctttt 14276621  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 245
Target Start/End: Original strand, 44761980 - 44762132
Alignment:
Q  86 tgtatgcataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttctttctataaa 184  Q
    |||||||| |||||| ||||| |||||||||| |||| || | ||||||||||| ||||||| |||||  ||||| |||||| ||||||||  || ||      
T  44761980 tgtatgcacaagtctatataaacattgtatgccttattatgaaaatcaatgaaaaatataatgaattttttttctcttttctatagtttctccctcta-- 44762077  T
Q  185 ttcaattctggagtgggattcctactcaaattggatcgtcgtattatttggttctttcatt 245  Q
       |||||||||||| ||| ||||||| ||||||   ||||||| ||||||| ||||||||    
T  44762078 ---aattctggagtgtgatccctactcgaattgg---gtcgtatcatttggtgctttcatt 44762132  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 175
Target Start/End: Original strand, 44765287 - 44765377
Alignment:
Q  86 tgtatgcataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttct 175  Q
    |||||||| |||||| ||||| |||||||| | |||| || | ||||||||||| ||||||| ||||| |||||| |||||| ||||||||    
T  44765287 tgtatgcacaagtctatataaacattgtattccttattatgaaaatcaatgaaaaatataatgaattttctttctcttttctatagtttct 44765377  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 24733645 - 24733706
Alignment:
Q  102 tataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttctttt 163  Q
    ||||||||||||||| || || |||||||  ||||||| ||||||| |||||||||||||||    
T  24733645 tataagcattgtatgtttcatgattagaaggaatgaaaaatataatgaatttcctttctttt 24733706  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 55322463 - 55322394
Alignment:
Q  95 aagtctgtataagcattgtatgctttataattagaatcaatgaaagat-ataatcaatttcctttctttt 163  Q
    |||||| |||||||||||||||| | || ||||| || ||||||| || ||||| |||||||||||||||    
T  55322463 aagtctatataagcattgtatgcctcattattaggatgaatgaaaaataataatgaatttcctttctttt 55322394  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 45327541 - 45327464
Alignment:
Q  86 tgtatgcataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttctttt 163  Q
    |||||||| |||||| |||||||||||||||  |||| || ||||  ||||||| ||||||| |||||| ||||||||    
T  45327541 tgtatgcacaagtctatataagcattgtatgtcttattatgagaaaaaatgaaaaatataataaatttcttttctttt 45327464  T

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