View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20298_low_29 (Length: 245)
Name: NF20298_low_29
Description: NF20298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20298_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 52476226 - 52476438
Alignment:
| Q |
15 |
ttcatcaacaagttacccttcctttctaagcaaaagactccaaattatatactgaaagttacttggatgatttgtataaccacctgaaggcccttgtaga |
114 |
Q |
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| T |
52476226 |
ttcatcaacaagttacccttcctttctaagcaaaagactccaaattatatactgaaagttacttggatgatttgtataaccacctgtaggcccttgtaga |
52476325 |
T |
|
| Q |
115 |
atctggtccatggtaacctcaaagggaacgcaagcattgcttcagacacacgagcaacatccttgtgcatcattgctagttcatggctactctcaatgct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52476326 |
atctggtccatggtaacctcaaagggaacgcaagcattgcttcagacacacgagcaacatccttgtgcatcattgctagttcatggctactctcaatgct |
52476425 |
T |
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| Q |
215 |
tattagcatcttg |
227 |
Q |
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| T |
52476426 |
tattagcatcttg |
52476438 |
T |
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