View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20298_low_3 (Length: 772)

Name: NF20298_low_3
Description: NF20298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20298_low_3
NF20298_low_3
[»] chr1 (5 HSPs)
chr1 (517-757)||(23202980-23203220)
chr1 (329-466)||(23203409-23203547)
chr1 (255-328)||(23204849-23204922)
chr1 (458-501)||(23203272-23203315)
chr1 (21-89)||(33161430-33161498)
[»] chr5 (14 HSPs)
chr5 (13-158)||(41900181-41900326)
chr5 (47-245)||(32268817-32269021)
chr5 (618-757)||(32255048-32255187)
chr5 (255-328)||(32250396-32250470)
chr5 (266-328)||(32255881-32255943)
chr5 (255-328)||(32264927-32265000)
chr5 (16-72)||(32268762-32268818)
chr5 (536-591)||(32264478-32264533)
chr5 (330-365)||(32264762-32264797)
chr5 (423-501)||(32264597-32264675)
chr5 (608-689)||(32248852-32248935)
chr5 (108-148)||(41886296-41886336)
chr5 (534-591)||(32255415-32255472)
chr5 (361-414)||(32255573-32255626)
[»] chr4 (7 HSPs)
chr4 (255-328)||(28719574-28719647)
chr4 (21-84)||(6007662-6007725)
chr4 (24-89)||(55907434-55907499)
chr4 (100-148)||(1488824-1488872)
chr4 (28-83)||(2525761-2525816)
chr4 (104-149)||(1537250-1537295)
chr4 (23-88)||(2168015-2168080)
[»] chr7 (4 HSPs)
chr7 (17-91)||(15091347-15091421)
chr7 (30-89)||(10168806-10168865)
chr7 (30-89)||(10176331-10176390)
chr7 (111-152)||(10616209-10616250)
[»] chr3 (2 HSPs)
chr3 (21-91)||(513426-513496)
chr3 (106-148)||(51120330-51120372)
[»] chr2 (2 HSPs)
chr2 (24-89)||(1036176-1036241)
chr2 (100-148)||(45244526-45244574)
[»] chr8 (2 HSPs)
chr8 (26-89)||(32152208-32152271)
chr8 (103-148)||(17642614-17642659)
[»] chr6 (1 HSPs)
chr6 (21-82)||(6395772-6395833)


Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 517 - 757
Target Start/End: Complemental strand, 23203220 - 23202980
Alignment:
Q  517 aaactccgccctaatattaatgaccgcacggagcactataatgtgttgagccccatgtgacatttgataagccaggtgacatttgtttaaggattctata 616  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||| |||||||||||||||| |||||||     
T  23203220 aaactccgccctaatattaatgaccgcacggagcactgtaatgtgttgagccccagttgacatttgataagccaagtgacatttgtttaagaattctatg 23203121  T
Q  617 ataagtttattgcattcttcctccatggaagtcatgctcaactttgcaaaaatttgagtgcatgggcattagataataagcttgacatcctagctaggtt 716  Q
    |||||| |||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| || |||||||||||||| |||||||    
T  23203120 ataagtatattgcattcatcctccatggaagtcatgttcaactttgcaaaaattagagtgcatgggcattagatgatgagcttgacatcctaactaggtt 23203021  T
Q  717 gagatcctaaattcattacctatcatttgcaacatcctaac 757  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  23203020 gagatcctaaattcattacctatcatttgcaacatcctaac 23202980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 329 - 466
Target Start/End: Complemental strand, 23203547 - 23203409
Alignment:
Q  329 tagttacttgcaattatttgcatctt-ataattttatcaagtatgtgtagctggtcccttccattgtatgtgtctgggtttgcccttgtcggttcataaa 427  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||| |||||||||    
T  23203547 tagttacttgcaattatttgcatctttataattttatcaagtatgtgtagctggtcccttccattgtatgagtctgagattgcccttgtcagttcataaa 23203448  T
Q  428 aaagatgtagattcaaccaaggccctctcttccttaatg 466  Q
     |||||||||||||| ||||||||||||| |||||||||    
T  23203447 caagatgtagattcacccaaggccctctcctccttaatg 23203409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 255 - 328
Target Start/End: Complemental strand, 23204922 - 23204849
Alignment:
Q  255 cttgcaccacggaagacagtttcaaccatatcaatgaactcttgtttgtctctgagagcccaattaatcatatt 328  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  23204922 cttgcaccacagaagacagtttcaaccatatcaatgaactcttgttcgtctctgagagtccaattaatcatatt 23204849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 458 - 501
Target Start/End: Complemental strand, 23203315 - 23203272
Alignment:
Q  458 tccttaatgttagtctatgtttaggggaaagtttgtgaagctca 501  Q
    ||||||||| | ||||||||||||||||||||||||||||||||    
T  23203315 tccttaatgctggtctatgtttaggggaaagtttgtgaagctca 23203272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 33161430 - 33161498
Alignment:
Q  21 gtgagagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 89  Q
    ||||| |||||||||||| | || | ||||||||| ||||||||||||||||| || ||||| ||||||    
T  33161430 gtgagtgagaatcgaagactattagtgatggagagaaactgtttggagacgagggatagagaattcaag 33161498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 7e-48; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 41900326 - 41900181
Alignment:
Q  13 cacagactgtgagagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaagcatacattgtcgtcgttgaggaa 112  Q
    |||||| ||| ||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||| |   ||| ||||| ||||||||    
T  41900326 cacagattgtaagagagaatcgaagagtgttggtgatggagagaaactgtttggagacgagtgagagagatttcaagtagtgattatcgtctttgaggaa 41900227  T
Q  113 tttgaagacacattcgcaacactcatctggtaaatatgaaccagaa 158  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  41900226 tttgaagacacattcccaacactcatctggtaaatatgaaccagaa 41900181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 47 - 245
Target Start/End: Original strand, 32268817 - 32269021
Alignment:
Q  47 gatggagagcaactgtttggagacgagtgagagagatttcaagcatacattgtcgtcgttgaggaatttgaagacacattcgcaacactcatctggtaaa 146  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||||  ||||| ||| || | |||||||||||||||||| ||||||||||||||||||    
T  32268817 gatggagagtaactgtttggagacgatggagagagatttcaagcatcgattgttgtctttcaagaatttgaagacacattcccaacactcatctggtaaa 32268916  T
Q  147 tatgaaccagaaatatatcattgatt---ttcttctttttgcatcactg-------atgttctacttcttctttttgtttgagtggacttcatagttgcc 236  Q
    ||||||||||||    ||||||||||   ||||||||||||||||||||       ||||||| ||||||||||||||   |||||||| |||||||  |    
T  32268917 tatgaaccagaa----atcattgattttcttcttctttttgcatcactggaccgcaatgttcttcttcttctttttgtcgaagtggactccatagttagc 32269012  T
Q  237 agatgagtg 245  Q
    |||||||||    
T  32269013 agatgagtg 32269021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 618 - 757
Target Start/End: Complemental strand, 32255187 - 32255048
Alignment:
Q  618 taagtttattgcattcttcctccatggaagtcatgctcaactttgcaaaaatttgagtgcatgggcattagataataagcttgacatcctagctaggttg 717  Q
    ||||| |||||||||| |||||||||| | ||||| ||||||||||||| ||| |||||||||| ||| |||  | ||  |||||||||||  || ||||    
T  32255187 taagtctattgcattcctcctccatgggaatcatgttcaactttgcaaatattagagtgcatggacatcagaagaaaaagttgacatcctaattaagttg 32255088  T
Q  718 agatcctaaattcattacctatcatttgcaacatcctaac 757  Q
    | | || ||||||| |||||||||||||||||| ||||||    
T  32255087 acacccaaaattcactacctatcatttgcaacaccctaac 32255048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 255 - 328
Target Start/End: Complemental strand, 32250470 - 32250396
Alignment:
Q  255 cttgcaccacggaagacagtttcaaccatatcaatgaactcttgtttgtctc-tgagagcccaattaatcatatt 328  Q
    |||| |||||||||||||||||||||  |||||| ||||||||||||||||| | ||||||||||||||||||||    
T  32250470 cttgaaccacggaagacagtttcaacggtatcaacgaactcttgtttgtctcttcagagcccaattaatcatatt 32250396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 266 - 328
Target Start/End: Complemental strand, 32255943 - 32255881
Alignment:
Q  266 gaagacagtttcaaccatatcaatgaactcttgtttgtctctgagagcccaattaatcatatt 328  Q
    |||||||||||||||  |||||| |||||||||||||||||||||| ||||||||||| ||||    
T  32255943 gaagacagtttcaacggtatcaacgaactcttgtttgtctctgagaacccaattaatcttatt 32255881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 255 - 328
Target Start/End: Complemental strand, 32265000 - 32264927
Alignment:
Q  255 cttgcaccacggaagacagtttcaaccatatcaatgaactcttgtttgtctctgagagcccaattaatcatatt 328  Q
    |||||||| | |||||||||||||||  |||||| |||||||||||||||||||| | ||||||||||| ||||    
T  32265000 cttgcaccgcagaagacagtttcaacggtatcaacgaactcttgtttgtctctgataacccaattaatcttatt 32264927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 32268762 - 32268818
Alignment:
Q  16 agactgtgagagagaatcgaagattgttggagatggagagcaactgtttggagacga 72  Q
    |||||||||||||||||||||||  ||||| ||||||||| ||||||||||||||||    
T  32268762 agactgtgagagagaatcgaagacggttggtgatggagagtaactgtttggagacga 32268818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 536 - 591
Target Start/End: Complemental strand, 32264533 - 32264478
Alignment:
Q  536 atgaccgcacggagcactataatgtgttgagccccatgtgacatttgataagccag 591  Q
    ||||| |||||||||||||||||||||||||||||  |  ||||||||||||||||    
T  32264533 atgactgcacggagcactataatgtgttgagccccgagaaacatttgataagccag 32264478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 330 - 365
Target Start/End: Complemental strand, 32264797 - 32264762
Alignment:
Q  330 agttacttgcaattatttgcatcttataattttatc 365  Q
    ||||||||||||||||||||||||||||||||||||    
T  32264797 agttacttgcaattatttgcatcttataattttatc 32264762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 501
Target Start/End: Complemental strand, 32264675 - 32264597
Alignment:
Q  423 ataaaaaagatgtagattcaaccaaggccctctcttccttaatgttagtctatgtttaggggaaagtttgtgaagctca 501  Q
    ||||| ||| |||||||||||||||| |||||||  |||||||||| ||||  ||||| |||||| |||||| ||||||    
T  32264675 ataaacaagttgtagattcaaccaagtccctctcccccttaatgttggtcttagtttaagggaaaatttgtgtagctca 32264597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 608 - 689
Target Start/End: Complemental strand, 32248935 - 32248852
Alignment:
Q  608 gattctataataagtttattgcattcttcctcc--atggaagtcatgctcaactttgcaaaaatttgagtgcatgggcattaga 689  Q
    |||||||| | |||| |||||||||| |||||   |||||| ||||| |||||||||||||| || |||||||||| |||||||    
T  32248935 gattctatgacaagtctattgcattcctcctctcgatggaaatcatgttcaactttgcaaaatttagagtgcatggacattaga 32248852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 41886336 - 41886296
Alignment:
Q  108 aggaatttgaagacacattcgcaacactcatctggtaaata 148  Q
    |||||||||||||||||||| ||||||||||| ||||||||    
T  41886336 aggaatttgaagacacattcccaacactcatcaggtaaata 41886296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 534 - 591
Target Start/End: Complemental strand, 32255472 - 32255415
Alignment:
Q  534 taatgaccgcacggagcactataatgtgttgagccccatgtgacatttgataagccag 591  Q
    ||||||||||| | |||| |  |||||||||||||||  |||||||||||||||||||    
T  32255472 taatgaccgcatgtagcattgcaatgtgttgagcccctggtgacatttgataagccag 32255415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 361 - 414
Target Start/End: Complemental strand, 32255626 - 32255573
Alignment:
Q  361 ttatcaagtatgtgtagctggtcccttccattgtatgtgtctgggtttgccctt 414  Q
    ||||||||||||||||  ||||||| |||||||||||  ||||||| |||||||    
T  32255626 ttatcaagtatgtgtatatggtcccatccattgtatgaatctgggtgtgccctt 32255573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 255 - 328
Target Start/End: Complemental strand, 28719647 - 28719574
Alignment:
Q  255 cttgcaccacggaagacagtttcaaccatatcaatgaactcttgtttgtctctgagagcccaattaatcatatt 328  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  28719647 cttgcaccatggaagacagtttcaacgatatcaatgaactcttgtttgtctctgagagcccaattaatcttatt 28719574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 6007662 - 6007725
Alignment:
Q  21 gtgagagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatt 84  Q
    |||||||||||||| ||| |||||| ||||||||| |||||||| |||||||| ||||||||||    
T  6007662 gtgagagagaatcggagactgttggtgatggagaggaactgtttcgagacgagggagagagatt 6007725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 55907499 - 55907434
Alignment:
Q  24 agagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 89  Q
    ||||||||||||||| |||||| ||  ||||| |||||||||||||||  ||||||||||||||||    
T  55907499 agagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaag 55907434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 1488872 - 1488824
Alignment:
Q  100 cgtcgttgaggaatttgaagacacattcgcaacactcatctggtaaata 148  Q
    |||||||||||||||||| ||||||||| || |||||||| ||||||||    
T  1488872 cgtcgttgaggaatttgacgacacattcccagcactcatcaggtaaata 1488824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 2525761 - 2525816
Alignment:
Q  28 agaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagat 83  Q
    ||||||||||| |||||| |||||| || |||||||| |||||||| |||||||||    
T  2525761 agaatcgaagactgttggtgatggacagaaactgttttgagacgagggagagagat 2525816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 1537295 - 1537250
Alignment:
Q  104 gttgaggaatttgaagacacattcgcaacactcatctggtaaatat 149  Q
    |||||||||| |||| |||||||| ||||||||||| |||||||||    
T  1537295 gttgaggaatctgaatacacattcccaacactcatcaggtaaatat 1537250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 2168015 - 2168080
Alignment:
Q  23 gagagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaa 88  Q
    |||||||||||||||| | |||| |||||| || ||||| |||||||| | ||||||||| |||||    
T  2168015 gagagagaatcgaagactattggtgatggacagaaactgcttggagacaactgagagagacttcaa 2168080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 15091421 - 15091347
Alignment:
Q  17 gactgtgagagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaagca 91  Q
    |||| ||||||| ||| ||||| |||||| ||||||||| ||||||||||||||||| |||||||| ||||||||    
T  15091421 gactctgagagaaaatagaagactgttggtgatggagaggaactgtttggagacgagggagagagaattcaagca 15091347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 10168865 - 10168806
Alignment:
Q  30 aatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 89  Q
    ||||||||| |||||| ||||||||| |||||||||||||| || || ||||| ||||||    
T  10168865 aatcgaagagtgttggtgatggagaggaactgtttggagacaagggatagagaattcaag 10168806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 10176390 - 10176331
Alignment:
Q  30 aatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 89  Q
    ||||||||| |||||| ||||||||| |||||||||||||| || || ||||| ||||||    
T  10176390 aatcgaagagtgttggtgatggagaggaactgtttggagacaagggatagagaattcaag 10176331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 10616209 - 10616250
Alignment:
Q  111 aatttgaagacacattcgcaacactcatctggtaaatatgaa 152  Q
    |||||||||| |||||| ||||||||||| ||||||||||||    
T  10616209 aatttgaagatacattcccaacactcatcaggtaaatatgaa 10616250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 513496 - 513426
Alignment:
Q  21 gtgagagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaagca 91  Q
    |||||||||||||| |||||||||| ||||||||| |||||||| ||||||   |||||||||||||||||    
T  513496 gtgagagagaatcggagattgttggtgatggagagtaactgttttgagacggcggagagagatttcaagca 513426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 51120372 - 51120330
Alignment:
Q  106 tgaggaatttgaagacacattcgcaacactcatctggtaaata 148  Q
    |||||||||||||||||||||| ||||| ||||| ||||||||    
T  51120372 tgaggaatttgaagacacattcccaacagtcatcaggtaaata 51120330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 1036241 - 1036176
Alignment:
Q  24 agagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 89  Q
    ||||||||||||||| |||||| ||  ||||| |||||||||||||||  ||||||||||||||||    
T  1036241 agagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaag 1036176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 45244574 - 45244526
Alignment:
Q  100 cgtcgttgaggaatttgaagacacattcgcaacactcatctggtaaata 148  Q
    |||||||||||||||| ||||||||||| ||||||||||| ||||||||    
T  45244574 cgtcgttgaggaatttcaagacacattcccaacactcatcaggtaaata 45244526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 32152208 - 32152271
Alignment:
Q  26 agagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 89  Q
    ||||||||| ||| |||||| ||||||||| ||||||||||||||||| ||||| || ||||||    
T  32152208 agagaatcggagactgttggtgatggagaggaactgtttggagacgagggagagtgaattcaag 32152271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 17642659 - 17642614
Alignment:
Q  103 cgttgaggaatttgaagacacattcgcaacactcatctggtaaata 148  Q
    |||||||||||||||||||| | || ||||||||||| ||||||||    
T  17642659 cgttgaggaatttgaagacagactcccaacactcatcaggtaaata 17642614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 6395772 - 6395833
Alignment:
Q  21 gtgagagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagaga 82  Q
    ||||| || ||||||||||  |||| ||||||||| ||||| ||||||||||| ||||||||    
T  6395772 gtgagtgaaaatcgaagatgattggtgatggagaggaactgcttggagacgagggagagaga 6395833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University