View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20298_low_33 (Length: 231)
Name: NF20298_low_33
Description: NF20298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20298_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 14812598 - 14812418
Alignment:
| Q |
1 |
ttgacaaggtggtgatgtttatcaaattgttgcatgataaagatttgttccataagtactataaaatgcaccttgcaaagaggcttttgtttgggaaaac |
100 |
Q |
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| T |
14812598 |
ttgacaaggtgatgatgtttatcaaattgttgcatgataaagatttgttccataagtactataaaaagcaccttccaaagaggcttttgtttgggaaaac |
14812499 |
T |
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| Q |
101 |
aatatctgaagatatatagagaagtctcgctgttaaactc--aagaatatgtggatacaaatttgcactattagagataat |
179 |
Q |
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| T |
14812498 |
aatatctgaagatatagagagaagtctcgctgttaaactcaaaagagtatgtggttacaaatttgcactattagagataat |
14812418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 15259593 - 15259413
Alignment:
| Q |
1 |
ttgacaaggtggtgatgtttatcaaattgttgcatgataaagatttgttccataagtactataaaatgcaccttgcaaagaggcttttgtttgggaaaac |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| |
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| T |
15259593 |
ttgacaaggtgatgatgtttatcaaattgttgcatgataaagatttgttccataagtactataaaaagcaccttacaaagaggcttttgtttggaaaaac |
15259494 |
T |
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| Q |
101 |
aatatctgaagatatatagagaagtctcgctgttaaactc--aagaatatgtggatacaaatttgcactattagagataat |
179 |
Q |
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| T |
15259493 |
aatatctgaagatatagagagaaatctcgctgttaaactcaaaagagtatgtggttacaaatttgcactattagagataat |
15259413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 17521582 - 17521762
Alignment:
| Q |
1 |
ttgacaaggtggtgatgtttatcaaattgttgcatgataaagatttgttccataagtactataaaatgcaccttgcaaagaggcttttgtttgggaaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
17521582 |
ttgacaaggtggtgatgtttatcaaattgttgcatgataaagatttgttccataagtactataaaaagcaccttgcaaagaggcttttgtttggcaaaac |
17521681 |
T |
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| Q |
101 |
aatatctgaagatatatagagaagtctcgctgttaaactc--aagaatatgtggatacaaatttgcactattagagataat |
179 |
Q |
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|||||||||||||||| |||||| |||||||||||||||| |||| ||||||| |||||||||||||||||||||||||| |
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| T |
17521682 |
aatatctgaagatatagagagaaatctcgctgttaaactcaaaagagtatgtggttacaaatttgcactattagagataat |
17521762 |
T |
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