View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20298_low_5 (Length: 693)

Name: NF20298_low_5
Description: NF20298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20298_low_5
NF20298_low_5
[»] chr5 (3 HSPs)
chr5 (11-677)||(9712258-9712908)
chr5 (16-83)||(9724346-9724413)
chr5 (175-239)||(16127056-16127120)
[»] chr8 (3 HSPs)
chr8 (592-646)||(31106255-31106309)
chr8 (60-128)||(31106371-31106440)
chr8 (252-292)||(6020663-6020703)
[»] chr7 (2 HSPs)
chr7 (252-302)||(36909607-36909657)
chr7 (186-239)||(6824305-6824358)
[»] scaffold0316 (1 HSPs)
scaffold0316 (253-296)||(16023-16066)
[»] chr4 (2 HSPs)
chr4 (189-239)||(4161642-4161692)
chr4 (202-239)||(971878-971915)
[»] chr6 (1 HSPs)
chr6 (252-321)||(2782983-2783052)
[»] chr2 (2 HSPs)
chr2 (277-318)||(37561553-37561594)
chr2 (175-239)||(17220847-17220911)
[»] chr3 (1 HSPs)
chr3 (397-429)||(2577163-2577195)


Alignment Details
Target: chr5 (Bit Score: 586; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 11 - 677
Target Start/End: Original strand, 9712258 - 9712908
Alignment:
Q  11 agcagagaggggtatagtgtaactcatccgtaccacatgcaaattttgatcaagcttcaaaactgaaatattaccagtagaaactccaatatacctgcca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9712258 agcagagaggggtatagtgtaactcatccgtaccacatgcaaattttgatcaagcttcaaaactgaaatattaccagtagaaactccaatatacctgcca 9712357  T
Q  111 agcagatacatgttcataacctttgatgctccttaaaaatgtaatttctcaatggagtaaacaatcattttggaccttaaatgtgtgatgtgttgtcaca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9712358 agcagatacatgttcataacctttgatgctccttaaaaatgtaatttctcaatggagtaaacaatcattttggaccttacatgtgtgatgtgttgtcaca 9712457  T
Q  211 atagtctttgaatgtatcaaaatttcaaagtactcacggcgccatgattttgttgaagctctagaatgtagcttttgccaaaatcatggtggcttgccgt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  9712458 atagtctttgaatgtatcaaaatttcaaagtactcacggcgccatgattttgttgaagctctaaaatgtagcttttgccaaaaccatggtggcttgccgt 9712557  T
Q  311 gattccgctaaacttaccgccaattcatttcagacatgcaccaacatacccaaatgcgactttcatcagccattttggtcatcaaattgtctttcattag 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9712558 gattccgctaaacttaccgccaattcatttcagacatgcaccaacatacctaaatgcgactttcatcagccattttggtcatcaaattgtctttcattag 9712657  T
Q  411 ttagtttgattctcaaatgcgtcttatgccggtcaattcgtctatatacaattaccaataaaagacacacctgcttttgttatttcaatatattcaaaca 510  Q
    |||||||||||||||||||| ||||||| | ||||||||||||||                |||||||||||||||||||||||||||||||||||||||    
T  9712658 ttagtttgattctcaaatgcatcttatgtcagtcaattcgtctat----------------aagacacacctgcttttgttatttcaatatattcaaaca 9712741  T
Q  511 caattctgacatcgcctcacacgtttagctaccaaatgattatttactcttccacaatattttatttcgaagtacgcgtgttacttacatatagaggcta 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9712742 caattctgacatcgcctcacacgtttagctaccaaatgattatttactcttccacaatattttatttcgaagtacgcgtgttacttacatatagaggcta 9712841  T
Q  611 tgctgaatgactgcaaaagatgtgatttcttctttaacaatgtacaagtctgacaacagtttcttgt 677  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9712842 tgctgaatgactgcaaaagatgtgatttcttctttaacaatgtacaagtctgacaacagtttcttgt 9712908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 9724346 - 9724413
Alignment:
Q  16 agaggggtatagtgtaactcatccgtaccacatgcaaattttgatcaagcttcaaaactgaaatatta 83  Q
    |||||||||| |||||| ||| |  |||||| ||||||||||||||||||||||||||||||||||||    
T  9724346 agaggggtatggtgtaattcaactttaccacgtgcaaattttgatcaagcttcaaaactgaaatatta 9724413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 16127056 - 16127120
Alignment:
Q  175 tcattttggaccttaaatgtgtgatgtgttgtcacaatagtctttgaatgtatcaaaatttcaaa 239  Q
    ||||||||| || ||||||||| | | || ||||||||||||| | || ||||||||||||||||    
T  16127056 tcattttggtccctaaatgtgtaaggagtagtcacaatagtctctcaaagtatcaaaatttcaaa 16127120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 592 - 646
Target Start/End: Complemental strand, 31106309 - 31106255
Alignment:
Q  592 tacttacatatagaggctatgctgaatgactgcaaaagatgtgatttcttcttta 646  Q
    |||||||||||| |||||||| ||||||||||||||| | |||||||||||||||    
T  31106309 tacttacatatacaggctatgttgaatgactgcaaaacaagtgatttcttcttta 31106255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 31106440 - 31106371
Alignment:
Q  60 tcaagcttcaaaactgaaatattaccagtagaaactccaatatacctgccaa-gcagatacatgttcata 128  Q
    ||||||||||||||||| ||||||||| |||||  ||||||||||||  |||  ||||||||||||||||    
T  31106440 tcaagcttcaaaactgatatattaccattagaatgtccaatatacctatcaacacagatacatgttcata 31106371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 6020663 - 6020703
Alignment:
Q  252 ccatgattttgttgaagctctagaatgtagcttttgccaaa 292  Q
    |||||||||||||||||||||| | ||||| ||||||||||    
T  6020663 ccatgattttgttgaagctctaaagtgtagtttttgccaaa 6020703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 36909657 - 36909607
Alignment:
Q  252 ccatgattttgttgaagctctagaatgtagcttttgccaaaatcatggtgg 302  Q
    ||||||||||||| |||||||||| ||||||| ||| ||||||||||||||    
T  36909657 ccatgattttgttaaagctctagagtgtagctcttgtcaaaatcatggtgg 36909607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 6824305 - 6824358
Alignment:
Q  186 cttaaatgtgtgatgtgttgtcacaatagtctttgaatgtatcaaaatttcaaa 239  Q
    ||||||||||||||||||| || | ||| |||||| ||||||||||||| ||||    
T  6824305 cttaaatgtgtgatgtgttttcgctataatctttgcatgtatcaaaattacaaa 6824358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 253 - 296
Target Start/End: Original strand, 16023 - 16066
Alignment:
Q  253 catgattttgttgaagctctagaatgtagcttttgccaaaatca 296  Q
    |||||||||||||||| || | ||||||||||||||||||||||    
T  16023 catgattttgttgaagttccaaaatgtagcttttgccaaaatca 16066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 4161642 - 4161692
Alignment:
Q  189 aaatgtgtgatgtgttgtcacaatagtctttgaatgtatcaaaatttcaaa 239  Q
    |||||||| ||| || |||||||||||| || |||||||||||||||||||    
T  4161642 aaatgtgtaatgagtagtcacaatagtccttcaatgtatcaaaatttcaaa 4161692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 971878 - 971915
Alignment:
Q  202 gttgtcacaatagtctttgaatgtatcaaaatttcaaa 239  Q
    ||||||||||||||| || |||||||||||||||||||    
T  971878 gttgtcacaatagtcattcaatgtatcaaaatttcaaa 971915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 321
Target Start/End: Complemental strand, 2783052 - 2782983
Alignment:
Q  252 ccatgattttgttgaagctctagaatgtagcttttgccaaaatcatggtggcttgccgtgattccgctaa 321  Q
    |||||||||||||||||||| | | || ||||||   ||||||||| |||||| ||||||||||| ||||    
T  2783052 ccatgattttgttgaagctccaaagtgcagctttcaacaaaatcatagtggctcgccgtgattccactaa 2782983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 318
Target Start/End: Complemental strand, 37561594 - 37561553
Alignment:
Q  277 tgtagcttttgccaaaatcatggtggcttgccgtgattccgc 318  Q
    ||||||||||| ||||||||||||||||  ||||||||||||    
T  37561594 tgtagcttttggcaaaatcatggtggctcaccgtgattccgc 37561553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 17220911 - 17220847
Alignment:
Q  175 tcattttggaccttaaatgtgtgatgtgttgtcacaatagtctttgaatgtatcaaaatttcaaa 239  Q
    ||||||||| |||||||||| ||| ||  |||||||||||||  | |||||||||||||| ||||    
T  17220911 tcattttggtccttaaatgtttgaagtcctgtcacaatagtcgctaaatgtatcaaaattacaaa 17220847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 397 - 429
Target Start/End: Original strand, 2577163 - 2577195
Alignment:
Q  397 ttgtctttcattagttagtttgattctcaaatg 429  Q
    |||||||| ||||||||||||||||||||||||    
T  2577163 ttgtcttttattagttagtttgattctcaaatg 2577195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University