View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20298_low_6 (Length: 652)

Name: NF20298_low_6
Description: NF20298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20298_low_6
NF20298_low_6
[»] chr4 (15 HSPs)
chr4 (19-641)||(46428102-46428719)
chr4 (303-556)||(46015825-46016078)
chr4 (356-601)||(46027825-46028069)
chr4 (150-487)||(46020784-46021109)
chr4 (355-484)||(46015351-46015479)
chr4 (356-484)||(46020583-46020710)
chr4 (356-548)||(46303777-46303970)
chr4 (356-539)||(46021197-46021381)
chr4 (356-484)||(46246223-46246350)
chr4 (154-218)||(46015607-46015672)
chr4 (362-454)||(41074446-41074537)
chr4 (522-556)||(46028345-46028379)
chr4 (154-220)||(46304065-46304130)
chr4 (365-457)||(14320585-14320676)
chr4 (365-457)||(14321753-14321844)
[»] chr8 (4 HSPs)
chr8 (356-462)||(4522907-4523012)
chr8 (356-482)||(4525280-4525403)
chr8 (161-221)||(4525565-4525626)
chr8 (159-224)||(4522771-4522837)
[»] chr1 (9 HSPs)
chr1 (356-557)||(3802180-3802384)
chr1 (356-493)||(3802619-3802752)
chr1 (402-517)||(3801740-3801857)
chr1 (433-534)||(3804128-3804229)
chr1 (303-457)||(50668519-50668681)
chr1 (361-473)||(50668040-50668152)
chr1 (500-556)||(3803594-3803650)
chr1 (488-535)||(50669223-50669270)
chr1 (168-224)||(50667472-50667529)
[»] chr3 (1 HSPs)
chr3 (376-455)||(52806350-52806429)
[»] scaffold0384 (1 HSPs)
scaffold0384 (373-459)||(5721-5806)
[»] scaffold0079 (1 HSPs)
scaffold0079 (387-459)||(7947-8018)


Alignment Details
Target: chr4 (Bit Score: 563; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 19 - 641
Target Start/End: Complemental strand, 46428719 - 46428102
Alignment:
Q  19 ggtgtcacaatcaaacacatagggagtagtaacacaatcgccattctcattatatatagtattatagctctgaactagtccctttcggttcctgtacatc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46428719 ggtgtcacaatcaaacacatagggagtagtaacacaatcgccattctcattatatatagtattatagctctgaactagtccctttcggttcctgtacatc 46428620  T
Q  119 aaaagaggagtctgctggtaatttccacgaagcttcttaccaaattctgtttaatgttttgatcaattaagaaatgaagggtgaggttattttaatatgg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46428619 aaaagaggagtctgctggtaatttccacgaagcttcttaccaaattctgtttaatgttttgatcaattaagaaatgaagggtgaggttattttaatatgg 46428520  T
Q  219 ctgaaactgttaaagagaaaaggagaagaaaaaagacaacgcacaacagccacagaaaaatagaagacatgcataggaaaaaatagaatgaaatgggttg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  46428519 ctgaaactgttaaagagaaaaggagaagaaaaaagacaacgcacaacagccacagaaaaatagaagacatgcataggaaaaaatagaatgaaatgggctg 46428420  T
Q  319 aatttcccaagcctggcaacaatggcaagataaacacatgtccatattaacactcaatca---agaacttgcattttcataaaaacaggaaagcaaaaat 415  Q
    ||||||||||||||||||||||||||||||||||||||||||        ||||||||||   |||||||||||||||||||||||||||||||||||||    
T  46428419 aatttcccaagcctggcaacaatggcaagataaacacatgtc--------cactcaatcaattagaacttgcattttcataaaaacaggaaagcaaaaat 46428328  T
Q  416 aattgtatcttcgcatagttttaaagtcaaaatgtaaatcataacagttggacgaagtacatgttaacccaaattaatttaactgcaaagaacatatcaa 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46428327 aattgtatcttcgcatagttttaaagtcaaaatgtaaatcataacagttggacgaagtacatgttaacccaaattaatttaactgcaaagaacatatcaa 46428228  T
Q  516 tataccattacagcattgagtaaaacttactttctccttttcgctctgtgccccctactttttgtttcttaacaacatcattcttgcttgtcatataagg 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  46428227 tataccattacagcattgagtaaaacttactttctccttttcgctctgtgccccctattttttgtttattaacaacatcattcttgcttgtcatataagg 46428128  T
Q  616 ctctcgctctgtggctcctaattctt 641  Q
    ||||||||| ||||| ||||||||||    
T  46428127 ctctcgctccgtggcccctaattctt 46428102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 303 - 556
Target Start/End: Complemental strand, 46016078 - 46015825
Alignment:
Q  303 agaatgaaatgggttgaatttcccaagcctggcaacaatggcaagataaacacatgtccatattaacactcaatcaagaacttgcattttcataaaaaca 402  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||    
T  46016078 agaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaacatatgtgtatattaacactcaatcaagaacttgcattttcataaaaaca 46015979  T
Q  403 ggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataacagttggacgaagtacatgttaacccaaattaatttaactgca 502  Q
    ||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  46015978 ggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaaattaatataactgca 46015879  T
Q  503 aagaacatatcaatataccattacagcattgagtaaaacttactttctcctttt 556  Q
    ||||||||||||||| | ||||||||||||||||||||||||||| ||| ||||    
T  46015878 aagaacatatcaatacatcattacagcattgagtaaaacttacttgctcttttt 46015825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 356 - 601
Target Start/End: Complemental strand, 46028069 - 46027825
Alignment:
Q  356 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatc 455  Q
    |||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||    
T  46028069 atgtgcatattaacactcaaacaagaacttgcatcttcataaaaacaggaaagcaaaaataattgtatcttcacatagttt-aaagtcaaaatttaaatc 46027971  T
Q  456 ataacagttggacgaagtacatgttaacccaaattaatttaactgcaaagaacatatcaatataccattacagcattgagtaaaacttactttctccttt 555  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  46027970 ataacagatggacgaagtacatgttaacctaaattaatttaactgcaaagaacatatcaatacaccattacagcattgagtaaaacttactttctcctct 46027871  T
Q  556 tcgctctgtgccccctactttttgtttcttaacaacatcattcttg 601  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  46027870 tcgcactgtgccccctactttttgtttcttaacaacatcattcttg 46027825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 150 - 487
Target Start/End: Complemental strand, 46021109 - 46020784
Alignment:
Q  150 gcttcttaccaaattctgtttaatgttttgatcaattaagaaatgaagggtgaggttattttaatatggctgaaactgttaaagagaaaaggagaagaaa 249  Q
    ||||||||||||||||||||||||||||| || || ||||||||||||| ||||||||||||||||||||||||| ||||||| |||||   |||| |||    
T  46021109 gcttcttaccaaattctgtttaatgtttttatgaaataagaaatgaagg-tgaggttattttaatatggctgaaagtgttaaaaagaaagaaagaaaaaa 46021011  T
Q  250 aaagacaacgcacaacagccacagaaaaatagaagacatgcataggaaaaaatagaatgaaatgggttgaatttcccaagcctggcaacaatggcaagat 349  Q
    ||||||||| ||||||||||        |||| ||| |   ||||        ||||||||||||| ||||||||||||| |||||||||| ||||||||    
T  46021010 aaagacaacacacaacagcc--------ataggagata---atag--------agaatgaaatgggctgaatttcccaagtctggcaacaacggcaagat 46020930  T
Q  350 aaacacatgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaa------aataattgtatcttcgcatagttttaaagtc 443  Q
    | ||| |||| ||| |||||||||||||||||||||| |||||||| ||||||||||| |  |      ||||||||||||||| |||||||||||||||    
T  46020929 agacatatgtgcattttaacactcaatcaagaacttggattttcat-aaaacaggaaaacttatttgtgaataattgtatcttcacatagttttaaagtc 46020831  T
Q  444 aaaatgtaaatcataacagttgg---acgaagtacatgttaacccaa 487  Q
    |||| |||||||||||||| |||   | | |||||||||||||||||    
T  46020830 aaaacgtaaatcataacagatggatcaagtagtacatgttaacccaa 46020784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 355 - 484
Target Start/End: Complemental strand, 46015479 - 46015351
Alignment:
Q  355 catgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaat 454  Q
    ||||| |||||||||||||||||||||  |||||||||||||||| ||||||| ||| || |||| ||||||| ||| |||||||| |||||||||| ||    
T  46015479 catgtgcatattaacactcaatcaagaggttgcattttcataaaa-caggaaaacaacaagaattttatcttcacatggttttaaactcaaaatgtacat 46015381  T
Q  455 cataacagttggacgaagtacatgttaacc 484  Q
    |||||||| |||| ||||| ||||||||||    
T  46015380 cataacagatggatgaagtgcatgttaacc 46015351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 356 - 484
Target Start/End: Complemental strand, 46020710 - 46020583
Alignment:
Q  356 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatc 455  Q
    |||| |||||||||||||||||||||  ||||||||||||||||| |||||| |||||| |||||||||||| ||| |||||||| ||| || |||||||    
T  46020710 atgtgcatattaacactcaatcaagaggttgcattttcataaaaa-aggaaaacaaaaagaattgtatcttcacatggttttaaactcataaggtaaatc 46020612  T
Q  456 ataacagttggacgaagtacatgttaacc 484  Q
    ||||||| ||||  |||| ||||||||||    
T  46020611 ataacagatggattaagtgcatgttaacc 46020583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 356 - 548
Target Start/End: Original strand, 46303777 - 46303970
Alignment:
Q  356 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatc 455  Q
    |||| |||||||||||  |||||||| |||||||| | ||||||  ||||||||| ||| |||||| ||||| |||||||||||||||||||| ||||||    
T  46303777 atgtgcatattaacacaaaatcaagagcttgcattgtaataaaat-aggaaagcataaagaattgtgtcttcacatagttttaaagtcaaaatctaaatc 46303875  T
Q  456 ataacagttggacgaagtacatgttaa-cccaaattaatttaactgcaaagaacatatcaatataccattacagcattg-agtaaaacttacttt 548  Q
    ||||||| |||| ||| | |||||||| |||||  |||||| || ||||||||||| | ||||   ||| ||| ||||| |||||||||||||||    
T  46303876 ataacagatggatgaaatgcatgttaaccccaagctaatttcacagcaaagaacatgttaatacgacatcacaacattgaagtaaaacttacttt 46303970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 356 - 539
Target Start/End: Complemental strand, 46021381 - 46021197
Alignment:
Q  356 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatc 455  Q
    |||| |||||||||| ||||||||||  ||||||||  |||||| |||||||||| ||| |||||| |||||  ||  ||||||||||||  | ||||||    
T  46021381 atgtgcatattaacattcaatcaagaggttgcatttctataaaa-caggaaagcagaaagaattgtgtcttcaaatgattttaaagtcaa--tctaaatc 46021285  T
Q  456 ataacagttggacgaagtacatgttaacccaaattaatttaactgcaaagaacatatcaat--atac--cattacagcattgagtaaa 539  Q
    ||||||| |||| | ||| ||||||||| |||||||||||||||||||| || |||| |||  ||||  |||||||||||||||||||    
T  46021284 ataacagatggatggagtgcatgttaactcaaattaatttaactgcaaataatatattaattaatacaacattacagcattgagtaaa 46021197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 356 - 484
Target Start/End: Original strand, 46246223 - 46246350
Alignment:
Q  356 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatc 455  Q
    |||| |||||||||| ||||||||||  ||||||||||||||||| ||||||  ||||| |||||||||||| ||  |||||||| | | || |||||||    
T  46246223 atgtgcatattaacattcaatcaagaggttgcattttcataaaaa-aggaaaaaaaaaagaattgtatcttcacaaggttttaaacttataaggtaaatc 46246321  T
Q  456 ataacagttggacgaagtacatgttaacc 484  Q
    ||||||| ||||  |||| ||||||||||    
T  46246322 ataacagatggattaagtgcatgttaacc 46246350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 46015672 - 46015607
Alignment:
Q  154 cttaccaaattctgtttaatgttttgatcaattaagaaatg-aagggtgaggttattttaatatgg 218  Q
    |||| |||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||    
T  46015672 cttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatgg 46015607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 362 - 454
Target Start/End: Complemental strand, 41074537 - 41074446
Alignment:
Q  362 atattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaat 454  Q
    ||||||||||| |||||||| || |||||||| ||||| ||  |||||||||| |||||||||||| ||| |||||||||||||||| |||||    
T  41074537 atattaacactaaatcaagacctagcattttcttaaaa-cattaaagcaaaaagaattgtatcttcacatggttttaaagtcaaaatctaaat 41074446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 522 - 556
Target Start/End: Complemental strand, 46028379 - 46028345
Alignment:
Q  522 attacagcattgagtaaaacttactttctcctttt 556  Q
    |||||||||||||||||||||||||||||||||||    
T  46028379 attacagcattgagtaaaacttactttctcctttt 46028345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 46304065 - 46304130
Alignment:
Q  154 cttaccaaattctgtttaatgttttgatcaattaagaaatgaagggtgaggttattttaatatggct 220  Q
    |||| ||||||||| || |||||||||||||||||||||  ||||||||| ||||||||||| ||||    
T  46304065 cttagcaaattctgatttatgttttgatcaattaagaaa-caagggtgagattattttaatacggct 46304130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 365 - 457
Target Start/End: Complemental strand, 14320676 - 14320585
Alignment:
Q  365 ttaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcat 457  Q
    |||||| ||||||| ||  ||||||| |||||||| |||||||||||||  |||||||||||| ||| ||| || ||| || || ||||||||    
T  14320676 ttaacaatcaatcatgagattgcattctcataaaa-caggaaagcaaaatgaattgtatcttcacatggttctacagttaatatctaaatcat 14320585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 365 - 457
Target Start/End: Complemental strand, 14321844 - 14321753
Alignment:
Q  365 ttaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcat 457  Q
    |||||| ||||||| ||  |||||||||||| ||| |||||||||||||  |||||||||||| ||| ||| || ||| || || ||||||||    
T  14321844 ttaacaatcaatcatgagattgcattttcatgaaa-caggaaagcaaaatgaattgtatcttcccatggttctacagttaatatctaaatcat 14321753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 5e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 356 - 462
Target Start/End: Original strand, 4522907 - 4523012
Alignment:
Q  356 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatc 455  Q
    |||| ||| ||||||||||||||||| |||| |||||||||||| |||||||||||||| |||||| ||||| ||| |||||||||||||||| ||||||    
T  4522907 atgtgcattttaacactcaatcaagagcttgaattttcataaaa-caggaaagcaaaaagaattgtgtcttcacatggttttaaagtcaaaatctaaatc 4523005  T
Q  456 ataacag 462  Q
    |||||||    
T  4523006 ataacag 4523012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 356 - 482
Target Start/End: Original strand, 4525280 - 4525403
Alignment:
Q  356 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatc 455  Q
    |||| ||||||||||||||||||||| ||||  ||||||| |||||| ||||||||||| |||||  ||||| ||| |||||||||||||||  || |||    
T  4525280 atgtgcatattaacactcaatcaagagcttgatttttcat-aaaacaagaaagcaaaaagaattg--tcttcacatggttttaaagtcaaaacctagatc 4525376  T
Q  456 ataacagttggacgaagtacatgttaa 482  Q
    ||||||| |||| ||||| ||| ||||    
T  4525377 ataacagatggatgaagtgcattttaa 4525403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 4525565 - 4525626
Alignment:
Q  161 aattctgtttaatgttttgatcaattaagaaatg-aagggtgaggttattttaatatggctg 221  Q
    |||||||||||||||||| ||||| ||||||||| |||||||||||| ||||||||||||||    
T  4525565 aattctgtttaatgtttttatcaaataagaaatgaaagggtgaggttgttttaatatggctg 4525626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 4522771 - 4522837
Alignment:
Q  159 caaattctgtttaatgttttgatcaattaagaaa-tgaagggtgaggttattttaatatggctgaaa 224  Q
    ||||||||||||||| |||||||||| |||||||   ||||||||| | |||||||||||| |||||    
T  4522771 caaattctgtttaatattttgatcaaataagaaacaaaagggtgagatcattttaatatggatgaaa 4522837  T

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Target: chr1 (Bit Score: 56; Significance: 7e-23; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 356 - 557
Target Start/End: Original strand, 3802180 - 3802384
Alignment:
Q  356 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatc 455  Q
    |||| ||||||||||||||| |||||  ||| ||||||||||||  |||||||||||| |||||||| |||| ||| ||||||||||| |||| ||||||    
T  3802180 atgtgcatattaacactcaaacaagaggttgtattttcataaaat-aggaaagcaaaactaattgtagcttcacatggttttaaagtcgaaatctaaatc 3802278  T
Q  456 ataacagttggacgaagtacatgttaacccaaattaatttaactgcaaagaacatat---caata--tac-cattacagcattgagtaaaacttactttc 549  Q
    ||||||  || | ||| | ||| |||  ||||||||||||||| ||||  |||||||   ||| |  | |  ||||||||||||||||||||||||||||    
T  3802279 ataacatatgaaagaaatgcatattacgccaaattaatttaaccgcaa--aacatattgacaagaagtgcaaattacagcattgagtaaaacttactttc 3802376  T
Q  550 tccttttc 557  Q
    ||||||||    
T  3802377 tccttttc 3802384  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 356 - 493
Target Start/End: Original strand, 3802619 - 3802752
Alignment:
Q  356 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatc 455  Q
    |||| |||||||||||||||||||||  |||||||||||| |||| |||||| |||||  |||||||||||| |||  ||||||||||||||| |||       
T  3802619 atgtgcatattaacactcaatcaagaggttgcattttcat-aaaataggaaaacaaaacgaattgtatcttcacatgattttaaagtcaaaatctaa--- 3802714  T
Q  456 ataacagttggacgaagtacatgttaacccaaattaat 493  Q
    ||||||  |||| ||||| |||| || |||||||||||    
T  3802715 ataacaaatggaagaagtgcatgctagcccaaattaat 3802752  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 402 - 517
Target Start/End: Original strand, 3801740 - 3801857
Alignment:
Q  402 aggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataacagttggacgaagtacatgtt--aacccaaattaatttaact 499  Q
    ||||||||| ||| |||||| ||||| ||| |||||||||||||||| ||||||||||||| |||| ||| | ||||||  | |||||| |||||| |||    
T  3801740 aggaaagcataaagaattgtgtcttcacatggttttaaagtcaaaatctaaatcataacagatggatgaaatgcatgtttaaccccaaactaatttcact 3801839  T
Q  500 gcaaagaacatatcaata 517  Q
    ||||||||| ||| ||||    
T  3801840 gcaaagaacgtattaata 3801857  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 433 - 534
Target Start/End: Original strand, 3804128 - 3804229
Alignment:
Q  433 gttttaaagtcaaaatgtaaatcataacagttggacgaagtacatgttaacccaaattaatttaactgcaaagaacatatcaatataccattacagcatt 532  Q
    |||||||||||||||| ||||||||||||| |||| ||||| |||||||||||||| ||| || |  ||||||||||||| |||| | ||| ||| ||||    
T  3804128 gttttaaagtcaaaatttaaatcataacagatggatgaagtgcatgttaacccaaactaacttcatagcaaagaacatattaatacaacatcacaacatt 3804227  T
Q  533 ga 534  Q
    ||    
T  3804228 ga 3804229  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 303 - 457
Target Start/End: Complemental strand, 50668681 - 50668519
Alignment:
Q  303 agaatgaaatgggttgaatttcccaagcctggcaacaatggcaagataaacaca---------tgtccatattaacactcaatcaagaacttgcattttc 393  Q
    ||||||||||||| | ||||| ||||| ||| ||||||| |||||||||||| |         ||| ||||||||||||| ||||||| |||||||||||    
T  50668681 agaatgaaatgggctcaattttccaagtctgacaacaatagcaagataaacataaccaacttatgtgcatattaacactcgatcaagagcttgcattttc 50668582  T
Q  394 ataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcat 457  Q
    || ||| ||| |||||||||| |||| ||| ||| |||  || |||||||||||| ||||||||    
T  50668581 at-aaagcagtaaagcaaaaagaattctattttcacatgcttctaaagtcaaaatctaaatcat 50668519  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 361 - 473
Target Start/End: Complemental strand, 50668152 - 50668040
Alignment:
Q  361 catattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataa-ttgtatcttcgcatagttttaaagtcaaaatgtaaatcataa 459  Q
    |||||||||| ||||| |||| ||||||||||||||||  |||  ||||||||| || |||||||||| ||| ||| |||||||||||| |||||||| |    
T  50668152 catattaacattcaattaagagcttgcattttcataaag-cagtgaagcaaaaaaaaattgtatcttcacatggttctaaagtcaaaatttaaatcatga 50668054  T
Q  460 cagttggacgaagt 473  Q
    ||  ||||||||||    
T  50668053 catatggacgaagt 50668040  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 500 - 556
Target Start/End: Original strand, 3803594 - 3803650
Alignment:
Q  500 gcaaagaacatatcaatataccattacagcattgagtaaaacttactttctcctttt 556  Q
    ||||||||||||  | || | |||||| |||||||||||||||||||||||||||||    
T  3803594 gcaaagaacatagtattacaacattacggcattgagtaaaacttactttctcctttt 3803650  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 488 - 535
Target Start/End: Complemental strand, 50669270 - 50669223
Alignment:
Q  488 attaatttaactgcaaagaacatatcaatataccattacagcattgag 535  Q
    ||||||| |||||||||||||| ||||||| | |||||||||||||||    
T  50669270 attaattcaactgcaaagaacacatcaatagaacattacagcattgag 50669223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 50667529 - 50667472
Alignment:
Q  168 tttaatgttttgatcaattaagaaat-gaagggtgaggttattttaatatggctgaaa 224  Q
    |||| |||||||||||| ||||||||  |||||||||| |||||||| ||||||||||    
T  50667529 tttattgttttgatcaaataagaaatcaaagggtgaggatattttaacatggctgaaa 50667472  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 376 - 455
Target Start/End: Original strand, 52806350 - 52806429
Alignment:
Q  376 tcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatc 455  Q
    |||||| ||| ||| |||||||||||| ||||| ||||| ||||| |||||| ||| ||| |||||||||||| ||||||    
T  52806350 tcaagagcttccatgttcataaaaacaagaaagaaaaaagaattgcatcttcacattgttctaaagtcaaaatctaaatc 52806429  T

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Target: scaffold0384 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 459
Target Start/End: Original strand, 5721 - 5806
Alignment:
Q  373 caatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataa 459  Q
    |||||||||  || ||||||||||||| || |||| |||||| |||||||||| | || |||| ||||||||| |||||||||||||    
T  5721 caatcaagagttttcattttcataaaa-caagaaaacaaaaagaattgtatctacacaaagttctaaagtcaacatgtaaatcataa 5806  T

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Target: scaffold0079 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 387 - 459
Target Start/End: Original strand, 7947 - 8018
Alignment:
Q  387 cattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataa 459  Q
    ||||||||||||| || |||| |||||| |||||||||| | || |||| ||||||||| |||||||||||||    
T  7947 cattttcataaaa-caagaaaacaaaaagaattgtatctacacaaagttctaaagtcaacatgtaaatcataa 8018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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