View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20299_high_10 (Length: 258)
Name: NF20299_high_10
Description: NF20299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20299_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 6220861 - 6220673
Alignment:
| Q |
20 |
gattagaatacagtataggctggttcaccttaactttaactagagatactccaattttgtttaaaaagatcttgaccaattggaatggttatgcattcat |
119 |
Q |
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| T |
6220861 |
gattagaatacagtataggctggttcaccttaactttaactagagatactccaattttgtttaaaaagatcttgaccaattggaatagttatgcattcat |
6220762 |
T |
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| Q |
120 |
aaattttgattttgctcattttactcaatatatgtgatgtgagacttcattccaacaattgctaattgctatagcgagtgaacaacctacac |
211 |
Q |
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| T |
6220761 |
aaattttgattttgctcattttactcaatatatg---tgtgagacttcattccaacaattgctaattgctatagcgagtgaacaacctacac |
6220673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 6220629 - 6220583
Alignment:
| Q |
208 |
acactgtatcaatgttgttaaatggaacagagagaaataataagggt |
254 |
Q |
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| T |
6220629 |
acactgtatcaatgttgttaaatggaacagagagaaataataagggt |
6220583 |
T |
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