View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20299_high_16 (Length: 231)

Name: NF20299_high_16
Description: NF20299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20299_high_16
NF20299_high_16
[»] chr7 (9 HSPs)
chr7 (24-220)||(21930522-21930710)
chr7 (42-157)||(27944990-27945105)
chr7 (43-137)||(13770660-13770754)
chr7 (43-144)||(24339604-24339705)
chr7 (41-158)||(43027463-43027580)
chr7 (90-156)||(24105629-24105694)
chr7 (90-156)||(21864756-21864822)
chr7 (90-137)||(11061119-11061166)
chr7 (47-147)||(25481861-25481961)
[»] scaffold0223 (1 HSPs)
scaffold0223 (43-157)||(20121-20235)
[»] chr8 (12 HSPs)
chr8 (90-157)||(25192390-25192457)
chr8 (90-157)||(41838166-41838233)
chr8 (43-133)||(22651949-22652039)
chr8 (90-133)||(29510347-29510390)
chr8 (90-156)||(126392-126457)
chr8 (90-144)||(4673468-4673522)
chr8 (90-156)||(13437007-13437073)
chr8 (110-156)||(28642358-28642404)
chr8 (44-126)||(15816126-15816208)
chr8 (47-133)||(24669406-24669492)
chr8 (90-126)||(5813572-5813608)
chr8 (90-126)||(22204619-22204655)
[»] chr6 (18 HSPs)
chr6 (43-154)||(12696277-12696387)
chr6 (43-157)||(8365515-8365629)
chr6 (24-133)||(16766670-16766779)
chr6 (90-156)||(3398569-3398635)
chr6 (47-158)||(6898281-6898392)
chr6 (43-133)||(9107366-9107456)
chr6 (47-132)||(7977830-7977915)
chr6 (41-133)||(10770668-10770760)
chr6 (90-133)||(426557-426600)
chr6 (90-157)||(853902-853969)
chr6 (90-133)||(7938089-7938132)
chr6 (90-133)||(8777016-8777059)
chr6 (90-133)||(9027151-9027194)
chr6 (90-131)||(9658854-9658895)
chr6 (90-123)||(17841632-17841665)
chr6 (90-155)||(31959111-31959175)
chr6 (104-156)||(2153944-2153996)
chr6 (42-78)||(9911523-9911559)
[»] chr5 (12 HSPs)
chr5 (90-156)||(22013364-22013430)
chr5 (43-133)||(21522723-21522813)
chr5 (43-133)||(21533289-21533379)
chr5 (47-156)||(6247572-6247681)
chr5 (90-156)||(19820437-19820503)
chr5 (47-133)||(21191056-21191142)
chr5 (43-126)||(39698521-39698604)
chr5 (90-133)||(15382450-15382493)
chr5 (90-137)||(15410491-15410538)
chr5 (90-133)||(36642805-36642848)
chr5 (90-123)||(14674252-14674285)
chr5 (90-130)||(19552586-19552626)
[»] chr2 (11 HSPs)
chr2 (45-157)||(20539672-20539784)
chr2 (90-156)||(19536441-19536507)
chr2 (51-156)||(6940205-6940310)
chr2 (44-133)||(15657837-15657926)
chr2 (47-155)||(21624217-21624326)
chr2 (90-158)||(21091672-21091739)
chr2 (54-156)||(21374706-21374809)
chr2 (47-123)||(37558960-37559036)
chr2 (90-123)||(24894372-24894405)
chr2 (48-133)||(18841014-18841099)
chr2 (92-156)||(33519736-33519800)
[»] chr1 (11 HSPs)
chr1 (43-141)||(6612167-6612265)
chr1 (167-216)||(43168837-43168885)
chr1 (90-156)||(5944231-5944297)
chr1 (90-144)||(48040505-48040559)
chr1 (90-133)||(398808-398851)
chr1 (90-133)||(40917724-40917767)
chr1 (47-123)||(46348383-46348459)
chr1 (90-133)||(48450630-48450673)
chr1 (90-156)||(5927383-5927449)
chr1 (92-137)||(16297328-16297373)
chr1 (90-123)||(18556499-18556532)
[»] chr3 (7 HSPs)
chr3 (47-156)||(55401025-55401134)
chr3 (47-155)||(8587021-8587129)
chr3 (90-133)||(10335329-10335372)
chr3 (90-133)||(26492248-26492291)
chr3 (90-148)||(24205084-24205142)
chr3 (90-123)||(3865599-3865632)
chr3 (90-123)||(10318077-10318110)
[»] chr4 (8 HSPs)
chr4 (90-157)||(11651177-11651244)
chr4 (90-152)||(28084475-28084537)
chr4 (47-133)||(23292986-23293072)
chr4 (44-132)||(16303263-16303351)
chr4 (45-123)||(30298929-30299008)
chr4 (45-123)||(30327797-30327876)
chr4 (90-156)||(40481588-40481653)
chr4 (90-131)||(20633460-20633501)
[»] scaffold0003 (1 HSPs)
scaffold0003 (44-133)||(241567-241656)
[»] scaffold0053 (1 HSPs)
scaffold0053 (90-133)||(8771-8814)
[»] scaffold0306 (1 HSPs)
scaffold0306 (90-156)||(13350-13416)
[»] scaffold0152 (1 HSPs)
scaffold0152 (90-156)||(21911-21977)
[»] scaffold0007 (1 HSPs)
scaffold0007 (90-148)||(225311-225369)
[»] scaffold0027 (1 HSPs)
scaffold0027 (47-137)||(46651-46741)
[»] scaffold0171 (1 HSPs)
scaffold0171 (43-156)||(23371-23483)
[»] scaffold0018 (2 HSPs)
scaffold0018 (90-133)||(178862-178905)
scaffold0018 (90-131)||(192292-192333)
[»] scaffold0004 (1 HSPs)
scaffold0004 (54-126)||(92787-92859)
[»] scaffold0246 (1 HSPs)
scaffold0246 (90-156)||(19527-19592)
[»] scaffold0103 (1 HSPs)
scaffold0103 (90-123)||(51794-51827)


Alignment Details
Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 24 - 220
Target Start/End: Complemental strand, 21930710 - 21930522
Alignment:
Q  24 acgtgttgtatccatcactgacacgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgt 123  Q
    |||| |||| |||| ||||||||||||| ||||||| ||||| | | ||||||||||||       |||||||||||||||||||||||||||||||| |    
T  21930710 acgtcttgtgtccaacactgacacgacatcgacacttgtaattaaaatgaattatctaatttttt-aaattattagctgagtcggcgtgtcagtgtccat 21930612  T
Q  124 atcgtgtccgatgttcgtatctgtgcttcataggacttaataataaggtcatgataactcatacaaccacaatcagttatcttgattcatctctctc 220  Q
    || ||||   ||||    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21930611 attgtgt---atgt----atctgtgattcataggacttaataataaggtcatgataactcatacaaccacaatcagttatcttgattcatctctctc 21930522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 27945105 - 27944990
Alignment:
Q  42 tgacacgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgt 141  Q
    |||||||||||||||||| ||||| |||||||||||| |||       ||||||||||  | |||||||||||||||||||| ||||||||| ||| |||    
T  27945105 tgacacgacaccgacacttgtaattacactgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 27945006  T
Q  142 atctgtgcttcatagg 157  Q
    ||| ||||||||||||    
T  27945005 atccgtgcttcatagg 27944990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 13770754 - 13770660
Alignment:
Q  43 gacacgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgt 137  Q
    ||||||||| ||||||| ||||| |||||||||||| |||       ||||||||||||| |||||||| ||||||||||| |||||||||||||    
T  13770754 gacacgacaacgacacttgtaattacactgaattatgtaatttttttaaattattagctgtgtcggcgtatcagtgtccgtgtcgtgtccgatgt 13770660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 24339705 - 24339604
Alignment:
Q  43 gacacgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgta 142  Q
    ||||||||||||||||| ||||| |||||||||||| | |       ||||||||||||| |||||||||||| ||||| | ||||||||| ||| ||||    
T  24339705 gacacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcaatgtccatgtcgtgtccggtgtccgta 24339606  T
Q  143 tc 144  Q
    ||    
T  24339605 tc 24339604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 158
Target Start/End: Original strand, 43027463 - 43027580
Alignment:
Q  41 ctgacacgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcg 140  Q
    ||||||||||||||||||| ||| | |||||| ||||| | |       ||||||||||||| |||| ||||||||||||||| ||||||||  ||| ||    
T  43027463 ctgacacgacaccgacacttgtatttacactgcattatgtgattttttcaaattattagctgggtcgccgtgtcagtgtccgtgtcgtgtccagtgtccg 43027562  T
Q  141 tatctgtgcttcatagga 158  Q
     ||| |||||||||||||    
T  43027563 catccgtgcttcatagga 43027580  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 24105694 - 24105629
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctgtgcttcatag 156  Q
    ||||||||||||| |||||||||||||||||||| ||||||||| | | |||||| |||||||||||    
T  24105694 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccg-tatccgtatccgtgcttcatag 24105629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 21864822 - 21864756
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctgtgcttcatag 156  Q
    ||||||||||||| ||| | ||||| |||||||| |||||||||||||  ||||| |||||||||||    
T  21864822 aaattattagctgtgtccgtgtgtccgtgtccgtgtcgtgtccgatgtgtgtatccgtgcttcatag 21864756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 11061119 - 11061166
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgt 137  Q
    ||||||||||||| ||||| |||||||||||||| |||| ||||||||    
T  11061119 aaattattagctgtgtcggtgtgtcagtgtccgtgtcgtatccgatgt 11061166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 25481961 - 25481861
Alignment:
Q  47 cgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctg 146  Q
    ||||||| ||||| ||||| |||||||||||| | |       ||||||||||||| |||||||||||| ||||| | | ||||||||||| ||| ||||    
T  25481961 cgacaccaacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcattgtccatgttgtgtccgatgtccgtgtctg 25481862  T
Q  147 t 147  Q
    |    
T  25481861 t 25481861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 157
Target Start/End: Complemental strand, 20235 - 20121
Alignment:
Q  43 gacacgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgta 142  Q
    |||||||||| |||||| ||||| |||||||||||| | |       ||||||||||||| |||||||||||| ||||||| ||||||||| ||| ||||    
T  20235 gacacgacactgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgta 20136  T
Q  143 tctgtgcttcatagg 157  Q
    |||||||||||||||    
T  20135 tctgtgcttcatagg 20121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 90 - 157
Target Start/End: Original strand, 25192390 - 25192457
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctgtgcttcatagg 157  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||  ||||||||||||    
T  25192390 aaattattagctgtgtcggcgtgtcagtgtccgtatcgtgtccgatgtccgtattcgtgcttcatagg 25192457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 90 - 157
Target Start/End: Original strand, 41838166 - 41838233
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctgtgcttcatagg 157  Q
    ||||||||||||| |||| |||||||||||||||||||||||  |||| |||||| ||||||| ||||    
T  41838166 aaattattagctgtgtcgacgtgtcagtgtccgtatcgtgtcttatgtccgtatccgtgcttcttagg 41838233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 22652039 - 22651949
Alignment:
Q  43 gacacgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccg 133  Q
    ||||||||||||||||| ||||| | | |||||||| | |       ||||||||||||| |||||||||||||||||||| |||||||||    
T  22652039 gacacgacaccgacacttgtaattatattgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccg 22651949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 29510347 - 29510390
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccg 133  Q
    ||||||||||||| |||||||||||||||||||| |||||||||    
T  29510347 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccg 29510390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 126392 - 126457
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctgtgcttcatag 156  Q
    ||||||||||| | || ||||||||||| ||||||||||||||| ||| |||||| |||||||||||    
T  126392 aaattattagcggtgttggcgtgtcagtatccgtatcgtgtccg-tgtgcgtatccgtgcttcatag 126457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 4673468 - 4673522
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatc 144  Q
    ||||||||| ||| ||||||||||||||||| || ||||||||||||| ||||||    
T  4673468 aaattattatctgtgtcggcgtgtcagtgtctgtgtcgtgtccgatgtccgtatc 4673522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 13437007 - 13437073
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctgtgcttcatag 156  Q
    ||||||||||||| |||||||||||||||||| | || |||||| ||| | | || |||||||||||    
T  13437007 aaattattagctgtgtcggcgtgtcagtgtccatgtcatgtccggtgtccatgtccgtgcttcatag 13437073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 28642404 - 28642358
Alignment:
Q  110 gtgtcagtgtccgtatcgtgtccgatgttcgtatctgtgcttcatag 156  Q
    |||||| ||||||| ||||||||||||| |||||| |||||||||||    
T  28642404 gtgtcattgtccgtgtcgtgtccgatgtccgtatccgtgcttcatag 28642358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 15816126 - 15816208
Alignment:
Q  44 acacgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatc 126  Q
    ||||||||||||||||  |||| ||||| |||||| | |       |||||||||| || |||||||||||||||||||||||    
T  15816126 acacgacaccgacacttataattacactaaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtccgtatc 15816208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 24669492 - 24669406
Alignment:
Q  47 cgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccg 133  Q
    ||||||||||||| ||||| |||||||||||| |||       ||||||||| | | ||| ||||||||||||| || |||||||||    
T  24669492 cgacaccgacacttgtaattacactgaattatgtaatttcctcaaattattaacggtgtcagcgtgtcagtgtctgtgtcgtgtccg 24669406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 5813608 - 5813572
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatc 126  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  5813608 aaattattagctgtgtcggcgtgtccgtgtccgtatc 5813572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 22204655 - 22204619
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatc 126  Q
    |||||||||| || |||||||||||||||||||||||    
T  22204655 aaattattagttgtgtcggcgtgtcagtgtccgtatc 22204619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 154
Target Start/End: Complemental strand, 12696387 - 12696277
Alignment:
Q  43 gacacgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgta 142  Q
    |||||||||| |||||| ||||| |||||||||||| |||       ||||||||||||| |||||||||||||||||||| ||||||||| ||| ||||    
T  12696387 gacacgacactgacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccg-tgtccgta 12696289  T
Q  143 tctgtgcttcat 154  Q
    || |||||||||    
T  12696288 tccgtgcttcat 12696277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 157
Target Start/End: Original strand, 8365515 - 8365629
Alignment:
Q  43 gacacgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgta 142  Q
    ||||||||||||||||| ||||| |||| ||||||| | |       |||||||||| || |||||||||||||||||||| ||||||| | ||| ||||    
T  8365515 gacacgacaccgacacttgtaattacaccgaattatgtgatattttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtctggtgtccgta 8365614  T
Q  143 tctgtgcttcatagg 157  Q
    || ||||||||||||    
T  8365615 tccgtgcttcatagg 8365629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 133
Target Start/End: Complemental strand, 16766779 - 16766670
Alignment:
Q  24 acgtgttgtatccatcactgacacgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgt 123  Q
    ||||||||| |||  ||| ||||||||||||||||| ||||| |||||||||||| | |       ||||||||||||| |||||||||||||||||| |    
T  16766779 acgtgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccat 16766680  T
Q  124 atcgtgtccg 133  Q
     |||||||||    
T  16766679 gtcgtgtccg 16766670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 3398635 - 3398569
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctgtgcttcatag 156  Q
    ||||||||||||| |||||||||||||||||||| |||||| |||||| ||||||  ||||||||||    
T  3398635 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgttcgatgtccgtatccatgcttcatag 3398569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 158
Target Start/End: Original strand, 6898281 - 6898392
Alignment:
Q  47 cgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctg 146  Q
    ||||||||||||| ||||| ||||| |||||| |||       ||||||||||  | ||| |||||||||||||| ||||||||||| ||||||| | ||    
T  6898281 cgacaccgacacttgtaattacacttaattatgtaatttgttcaaattattagacgtgtcagcgtgtcagtgtccatatcgtgtccgttgttcgtgtttg 6898380  T
Q  147 tgcttcatagga 158  Q
    ||||||||||||    
T  6898381 tgcttcatagga 6898392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 9107366 - 9107456
Alignment:
Q  43 gacacgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccg 133  Q
    ||||||||||||||||| ||||| |||||||||| | | |       ||||||||||||| |||||||||| ||||||||| |||||||||    
T  9107366 gacacgacaccgacacttgtaattacactgaattttgtgattttttcaaattattagctgtgtcggcgtgttagtgtccgtgtcgtgtccg 9107456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 7977830 - 7977915
Alignment:
Q  47 cgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtcc 132  Q
    ||||||||||||| ||||| |||||||||||| |||       ||||||||||||| |||||||||||||| ||| | ||||||||    
T  7977830 cgacaccgacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtcggcgtgtcagtatccatgtcgtgtcc 7977915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 133
Target Start/End: Original strand, 10770668 - 10770760
Alignment:
Q  41 ctgacacgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccg 133  Q
    ||||||||||||||||||| ||||| |||||||||||| | |       |||||||||| || || ||||||||||||||| | |||||||||    
T  10770668 ctgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagttgtgttggcgtgtcagtgtccatgtcgtgtccg 10770760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 426557 - 426600
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccg 133  Q
    ||||||||| ||| |||||||||||||||||||| |||||||||    
T  426557 aaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccg 426600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 157
Target Start/End: Original strand, 853902 - 853969
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctgtgcttcatagg 157  Q
    |||||||||| || |||||||||||||  ||||| ||||||||| ||| |||||| ||| ||||||||    
T  853902 aaattattagttgtgtcggcgtgtcagcatccgtgtcgtgtccggtgtccgtatccgtgattcatagg 853969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 133
Target Start/End: Complemental strand, 7938132 - 7938089
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccg 133  Q
    ||||||||||||| |||||||||||||||||| | |||||||||    
T  7938132 aaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccg 7938089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 8777016 - 8777059
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccg 133  Q
    |||||||||| || |||||||||||||||||||| |||||||||    
T  8777016 aaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccg 8777059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 133
Target Start/End: Complemental strand, 9027194 - 9027151
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccg 133  Q
    ||||||||||| | |||||||||||||||||||| |||||||||    
T  9027194 aaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccg 9027151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 9658895 - 9658854
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtc 131  Q
    ||||||||||| | |||||||||||||||||||| |||||||    
T  9658895 aaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtc 9658854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 17841632 - 17841665
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgt 123  Q
    ||||||||||||| ||||||||||||||||||||    
T  17841632 aaattattagctgtgtcggcgtgtcagtgtccgt 17841665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 155
Target Start/End: Complemental strand, 31959175 - 31959111
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctgtgcttcata 155  Q
    ||||||||||||| | |||||||||||||| ||| || |||||| ||| |||||| ||||||||||    
T  31959175 aaattattagctgtgacggcgtgtcagtgttcgtgtcatgtccg-tgtccgtatccgtgcttcata 31959111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 2153944 - 2153996
Alignment:
Q  104 gtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctgtgcttcatag 156  Q
    ||||||||||| |||||||| || |||||||||| ||| | ||||||||||||    
T  2153944 gtcggcgtgtcggtgtccgtgtcatgtccgatgtccgtgtttgtgcttcatag 2153996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 9911523 - 9911559
Alignment:
Q  42 tgacacgacaccgacactggtaatcacactgaattat 78  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  9911523 tgacacgacaccgacacttgtaattacactgaattat 9911559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 22013430 - 22013364
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctgtgcttcatag 156  Q
    ||||||||||||| |||||||||||||||||||| ||||||||| ||| |||||| |||||||||||    
T  22013430 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 22013364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 21522813 - 21522723
Alignment:
Q  43 gacacgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccg 133  Q
    ||||||||||||||| | ||||| |||||||||||| | |       ||||||||||||| |||||||||||||||||||| |||||||||    
T  21522813 gacacgacaccgacaattgtaattacactgaattatgttattttttaaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccg 21522723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 21533379 - 21533289
Alignment:
Q  43 gacacgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccg 133  Q
    ||||||||||||||| | ||||| |||||||||||| | |       ||||||||||||| |||||||||||||||||||| |||||||||    
T  21533379 gacacgacaccgacaattgtaattacactgaattatgttattttttaaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccg 21533289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 6247681 - 6247572
Alignment:
Q  47 cgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctg 146  Q
    ||||||||||||| ||||| |||||||||||| | |       |||||||||| || |||||||||||||||| ||||||||||||| ||| || ||| |    
T  6247681 cgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagatgtgtcggcgtgtcagtgtgcgtatcgtgtccggtgtccgcatccg 6247582  T
Q  147 tgcttcatag 156  Q
    || |||||||    
T  6247581 tgtttcatag 6247572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 19820437 - 19820503
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctgtgcttcatag 156  Q
    ||||||||||| | ||||| |||||||||||||| ||||||||| ||| |||||| |||||||||||    
T  19820437 aaattattagcggtgtcggagtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 19820503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 21191056 - 21191142
Alignment:
Q  47 cgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccg 133  Q
    ||||||||||||| ||||| |||||||||||| | |       ||||||||||||| |||||| ||||||||||||| |||||||||    
T  21191056 cgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcatgtcagtgtccgtgtcgtgtccg 21191142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 39698604 - 39698521
Alignment:
Q  43 gacacgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatc 126  Q
    |||||||||| |||||| ||||| |||||||||||| | |       ||||||||||||| ||| |||||||||||||||||||    
T  39698604 gacacgacactgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcagcgtgtcagtgtccgtatc 39698521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 133
Target Start/End: Complemental strand, 15382493 - 15382450
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccg 133  Q
    ||||||||||||| |||||||||||| ||||||| |||||||||    
T  15382493 aaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccg 15382450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 15410491 - 15410538
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgt 137  Q
    ||||||||||| | |||||||||||||||||||| ||||||| |||||    
T  15410491 aaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtctgatgt 15410538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 36642805 - 36642848
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccg 133  Q
    ||||||||| ||| |||||||||||||||||||| |||||||||    
T  36642805 aaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccg 36642848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 123
Target Start/End: Complemental strand, 14674285 - 14674252
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgt 123  Q
    ||||||||||||| ||||||||||||||||||||    
T  14674285 aaattattagctgtgtcggcgtgtcagtgtccgt 14674252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 19552586 - 19552626
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgt 130  Q
    ||||||||| ||| |||||||||||||||||||| ||||||    
T  19552586 aaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgt 19552626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 157
Target Start/End: Original strand, 20539672 - 20539784
Alignment:
Q  45 cacgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatc 144  Q
    ||||||||||||||| ||||| ||||| |||||| | |       ||||||||||||| |||| ||||||||||||||| ||||||||  ||| ||||||    
T  20539672 cacgacaccgacacttgtaattacactaaattatatgattttttcaaattattagctgtgtcgacgtgtcagtgtccgtgtcgtgtccagtgtccgtatc 20539771  T
Q  145 tgtgcttcatagg 157  Q
     ||||||||||||    
T  20539772 cgtgcttcatagg 20539784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 19536441 - 19536507
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctgtgcttcatag 156  Q
    |||||||||| || |||||||||||| ||||||| ||||||||| ||| ||||||||||||||||||    
T  19536441 aaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtatctgtgcttcatag 19536507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 156
Target Start/End: Complemental strand, 6940310 - 6940205
Alignment:
Q  51 accgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctgtgct 150  Q
    ||||||||| ||||| ||||| |||||| |||       ||||||||||||| |||||||||||||||||||| |||| |  ||||| |||||| ||| |    
T  6940310 accgacacttgtaattacacttaattatgtaactttttaaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtatttgatgtccgtatccgtgtt 6940211  T
Q  151 tcatag 156  Q
    ||||||    
T  6940210 tcatag 6940205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 15657926 - 15657837
Alignment:
Q  44 acacgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccg 133  Q
    |||||||||||||| | ||||| |||||||||||| | |       |||||||||| ||||||||||||| ||||||||| |||||||||    
T  15657926 acacgacaccgacatttgtaattacactgaattatgtgatttttacaaattattagttgagtcggcgtgttagtgtccgtgtcgtgtccg 15657837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 155
Target Start/End: Complemental strand, 21624326 - 21624217
Alignment:
Q  47 cgacaccgacactggtaatcacactgaattat-ctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatct 145  Q
    ||||||||||||| ||||| |||||||||||| |||        ||||||||||||| ||||||||||||||||| || |||||| || ||| ||||||     
T  21624326 cgacaccgacacttgtaattacactgaattatgctatttttttaaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgttcggtgtccgtatcc 21624227  T
Q  146 gtgcttcata 155  Q
    | ||||||||    
T  21624226 gggcttcata 21624217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 21091739 - 21091672
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctgtgcttcatagga 158  Q
    ||||||||||| | ||||| |||||||||||||| | ||||||| |||| ||||| |||||||||||||    
T  21091739 aaattattagcggtgtcggtgtgtcagtgtccgtcttgtgtccg-tgtttgtatccgtgcttcatagga 21091672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 156
Target Start/End: Original strand, 21374706 - 21374809
Alignment:
Q  54 gacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatc--gtgtccgatgttcgtatctgtgctt 151  Q
    |||||| ||||| |||||||||||| |||       ||||||||||||| |||||||||| ||||||||| ||  ||||||| ||| |||||| ||||||    
T  21374706 gacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtcggcgtgttagtgtccgtgtccggtgtccg-tgtccgtatccgtgctt 21374804  T
Q  152 catag 156  Q
    |||||    
T  21374805 catag 21374809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 37559036 - 37558960
Alignment:
Q  47 cgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgt 123  Q
    ||||||||||||| ||||| ||| |||||||| | |       ||||||||||||| ||||||||||||||||||||    
T  37559036 cgacaccgacacttgtaattacattgaattatgtgatttttacaaattattagctgtgtcggcgtgtcagtgtccgt 37558960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 123
Target Start/End: Complemental strand, 24894405 - 24894372
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgt 123  Q
    ||||||||||||| ||||||||||||||||||||    
T  24894405 aaattattagctgtgtcggcgtgtcagtgtccgt 24894372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 18841014 - 18841099
Alignment:
Q  48 gacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccg 133  Q
    |||||||||||| ||||| ||||| |||||| |||       |||||||||| || ||| |||||||||||||| | |||||||||    
T  18841014 gacaccgacacttgtaattacacttaattatgtaattttttcaaattattagttgtgtcagcgtgtcagtgtccatgtcgtgtccg 18841099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 33519800 - 33519736
Alignment:
Q  92 attattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctgtgcttcatag 156  Q
    ||||||||| | ||||| |||||||| ||||  ||||||||| ||| |||||| |||||||||||    
T  33519800 attattagcggtgtcggtgtgtcagtatccgcgtcgtgtccggtgtccgtatccgtgcttcatag 33519736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 6612167 - 6612265
Alignment:
Q  43 gacacgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgt 141  Q
    ||||||||||||||||| ||||| |||||||||||| |||       ||||||||| |||  ||||||||||| ||||||| ||||||||| |||||||    
T  6612167 gacacgacaccgacacttgtaattacactgaattatgtaattttttcaaattattaactgtatcggcgtgtcattgtccgtgtcgtgtccggtgttcgt 6612265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 43168837 - 43168885
Alignment:
Q  167 taaggtcatgataactcatacaaccacaatcagttatcttgattcatctc 216  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  43168837 taaggtaatgataactcatacaaccacaatcag-tatcttgattcatctc 43168885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 5944297 - 5944231
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctgtgcttcatag 156  Q
    ||||||||||||| | ||||||||||||||| || ||||||||||||| | | |||||| |||||||    
T  5944297 aaattattagctgtggcggcgtgtcagtgtctgtgtcgtgtccgatgtccttgtctgtgtttcatag 5944231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 48040505 - 48040559
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatc 144  Q
    ||||||||| ||| |||||||||||||||||||| ||||||||| ||| ||||||    
T  48040505 aaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatc 48040559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 398808 - 398851
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccg 133  Q
    ||||||||||| | |||||||||||||||||||| |||||||||    
T  398808 aaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccg 398851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 133
Target Start/End: Complemental strand, 40917767 - 40917724
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccg 133  Q
    ||||||||||||| |||||||||||||| ||||| |||||||||    
T  40917767 aaattattagctgtgtcggcgtgtcagtatccgtgtcgtgtccg 40917724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 46348383 - 46348459
Alignment:
Q  47 cgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgt 123  Q
    ||||||||||||| ||||| ||||| |||||| | |       ||||||||||||| ||||||||||||||||||||    
T  46348383 cgacaccgacacttgtaattacactaaattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccgt 46348459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 48450630 - 48450673
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccg 133  Q
    ||||||||||||| || ||||||||||||||||| |||||||||    
T  48450630 aaattattagctgtgttggcgtgtcagtgtccgtgtcgtgtccg 48450673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 5927383 - 5927449
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctgtgcttcatag 156  Q
    ||||||||||| | ||  |||||||||||||||| ||||||||| ||| |||||| |||||| ||||    
T  5927383 aaattattagcagtgttagcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttaatag 5927449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 16297328 - 16297373
Alignment:
Q  92 attattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgt 137  Q
    |||||| |||| |||| ||||||||| |||||||||||||||||||    
T  16297328 attatttgctgtgtcgacgtgtcagtatccgtatcgtgtccgatgt 16297373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 18556499 - 18556532
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgt 123  Q
    ||||||||||||| ||||||||||||||||||||    
T  18556499 aaattattagctgtgtcggcgtgtcagtgtccgt 18556532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 55401134 - 55401025
Alignment:
Q  47 cgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctg 146  Q
    ||||||||||||| ||||| ||||| |||||| | |       |||||||||| || |||||||| ||||||||||| |||| |||| ||| ||||||||    
T  55401134 cgacaccgacacttgtaattacactaaattatgtgattttttcaaattattagttgtgtcggcgtatcagtgtccgtgtcgtatccggtgtccgtatctg 55401035  T
Q  147 tgcttcatag 156  Q
    ||||||||||    
T  55401034 tgcttcatag 55401025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 47 - 155
Target Start/End: Original strand, 8587021 - 8587129
Alignment:
Q  47 cgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctg 146  Q
    ||||||||||||| ||||| ||||| |||||| | |       |||||| ||| || |||||||||||||||||||| || |||||| ||| ||||||||    
T  8587021 cgacaccgacacttgtaattacacttaattatgtgattttttcaaattactagatgtgtcggcgtgtcagtgtccgtgtcatgtccggtgtccgtatctg 8587120  T
Q  147 tgcttcata 155  Q
    |||||||||    
T  8587121 tgcttcata 8587129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 10335329 - 10335372
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccg 133  Q
    |||||||||| || |||||||||||||||||||| |||||||||    
T  10335329 aaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccg 10335372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 26492248 - 26492291
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccg 133  Q
    ||||||||||||  |||||||||||||||||||| |||||||||    
T  26492248 aaattattagctctgtcggcgtgtcagtgtccgtgtcgtgtccg 26492291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 24205084 - 24205142
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctgtg 148  Q
    ||||||||| | | |||||||||||||||||||| ||||||||| ||| ||| ||||||    
T  24205084 aaattattatccgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtctgtg 24205142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 3865599 - 3865632
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgt 123  Q
    ||||||||||||| ||||||||||||||||||||    
T  3865599 aaattattagctgtgtcggcgtgtcagtgtccgt 3865632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 10318077 - 10318110
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgt 123  Q
    ||||||||||||| ||||||||||||||||||||    
T  10318077 aaattattagctgtgtcggcgtgtcagtgtccgt 10318110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 90 - 157
Target Start/End: Original strand, 11651177 - 11651244
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctgtgcttcatagg 157  Q
    ||||||||||||| |||| |||||||||||||||||||||||  |||| |||||| ||||||| ||||    
T  11651177 aaattattagctgtgtcgacgtgtcagtgtccgtatcgtgtcttatgtccgtatccgtgcttcttagg 11651244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 152
Target Start/End: Complemental strand, 28084537 - 28084475
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctgtgcttc 152  Q
    ||||| ||||||| ||||||||||||| ||| || ||||||||| ||| ||||||||||||||    
T  28084537 aaattcttagctgtgtcggcgtgtcagcgtctgtgtcgtgtccggtgtccgtatctgtgcttc 28084475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 23292986 - 23293072
Alignment:
Q  47 cgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccg 133  Q
    ||||||||||||| ||||| | |||||||||| | |       ||||||||||||| |||||||||||| ||||||| |||||||||    
T  23292986 cgacaccgacacttgtaattatactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccg 23293072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 16303263 - 16303351
Alignment:
Q  44 acacgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtcc 132  Q
    |||||||||||||||| ||||| ||||| |||||| | |       ||| ||||| ||  |||||||||||||||||||||||||||||    
T  16303263 acacgacaccgacacttgtaattacactaaattatatcattttttcaaaatattatctttgtcggcgtgtcagtgtccgtatcgtgtcc 16303351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 30299008 - 30298929
Alignment:
Q  45 cacgacaccgacactggtaatcacactgaattatctaannnnnnn-aaattattagctgagtcggcgtgtcagtgtccgt 123  Q
    ||||||||||||||| ||||| |||||||||||| | |        ||||||||||||| ||||||||||||||||||||    
T  30299008 cacgacaccgacacttgtaattacactgaattatgtcatttttttcaaattattagctgtgtcggcgtgtcagtgtccgt 30298929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 30327876 - 30327797
Alignment:
Q  45 cacgacaccgacactggtaatcacactgaattatctaannnnnnn-aaattattagctgagtcggcgtgtcagtgtccgt 123  Q
    ||||||||||||||| ||||| |||||||||||| | |        ||||||||||||| ||||||||||||||||||||    
T  30327876 cacgacaccgacacttgtaattacactgaattatgtcatttttttcaaattattagctgtgtcggcgtgtcagtgtccgt 30327797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 40481653 - 40481588
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctgtgcttcatag 156  Q
    |||||||||| ||  |||||||||||||||| || ||||||||| ||||||||| |||| |||||||    
T  40481653 aaattattagttgtatcggcgtgtcagtgtcagtgtcgtgtccg-tgttcgtatttgtgattcatag 40481588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 20633501 - 20633460
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtc 131  Q
    ||||||||||| | |||| |||||||||||||||||||||||    
T  20633501 aaattattagcggtgtcgacgtgtcagtgtccgtatcgtgtc 20633460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 241656 - 241567
Alignment:
Q  44 acacgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccg 133  Q
    ||||||||||||||||  |||| ||||| |||||| | |       ||||||||||||| |||||||||||||||||||| |||||||||    
T  241656 acacgacaccgacactcataattacactaaattatgtgatttttccaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccg 241567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 133
Target Start/End: Complemental strand, 8814 - 8771
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccg 133  Q
    ||||||||||||| |||||||||||||||||||| |||||||||    
T  8814 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccg 8771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 13416 - 13350
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctgtgcttcatag 156  Q
    |||||||||| || |||||||||||||||||||| || | |||| ||| |||||| |||||||||||    
T  13416 aaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgtatccgtgcttcatag 13350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 21911 - 21977
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctgtgcttcatag 156  Q
    |||||||||| || |||||||||||||||||||| || | |||| ||| |||||| |||||||||||    
T  21911 aaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgtatccgtgcttcatag 21977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 225311 - 225369
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctgtg 148  Q
    ||||||||| ||| |||||||||||||||||||| ||||||||| ||| ||| ||||||    
T  225311 aaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtctgtg 225369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 137
Target Start/End: Complemental strand, 46741 - 46651
Alignment:
Q  47 cgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgt 137  Q
    ||||||||||| | ||||| |||||||||||| | |       ||||||||| ||| |||||||||||| ||||||| |||||||||||||    
T  46741 cgacaccgacatttgtaattacactgaattatgtgattttttcaaattattaactgtgtcggcgtgtcattgtccgtgtcgtgtccgatgt 46651  T

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Target: scaffold0171 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 156
Target Start/End: Complemental strand, 23483 - 23371
Alignment:
Q  43 gacacgacaccgacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgta 142  Q
    |||||||||||||||||  |||| |||||||||||| | |        | |||||| ||| ||||||||||||||||| || ||||||||| ||| ||||    
T  23483 gacacgacaccgacacttataattacactgaattatgtgatttttttgagttattatctgtgtcggcgtgtcagtgtctgtgtcgtgtccg-tgtccgta 23385  T
Q  143 tctgtgcttcatag 156  Q
    || |||||||||||    
T  23384 tccgtgcttcatag 23371  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 178862 - 178905
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccg 133  Q
    |||||||||| || |||||||||||||||||||| |||||||||    
T  178862 aaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccg 178905  T

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Target: scaffold0018; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 192292 - 192333
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtc 131  Q
    ||||||||| | | ||||||||||||||||||||||||||||    
T  192292 aaattattaacggtgtcggcgtgtcagtgtccgtatcgtgtc 192333  T

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Target: scaffold0004 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 92859 - 92787
Alignment:
Q  54 gacactggtaatcacactgaattatctaannnnnnnaaattattagctgagtcggcgtgtcagtgtccgtatc 126  Q
    |||||| ||||| |||||||||||| |||       ||||||||||| | |||||||||||||||||||||||    
T  92859 gacacttgtaattacactgaattatgtaattttctcaaattattagcggtgtcggcgtgtcagtgtccgtatc 92787  T

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Target: scaffold0246 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 19592 - 19527
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgtatcgtgtccgatgttcgtatctgtgcttcatag 156  Q
    |||||||||| ||  |||||||||||||||| || ||||||||| ||||||||| |||| |||||||    
T  19592 aaattattagttgtatcggcgtgtcagtgtcagtgtcgtgtccg-tgttcgtatttgtgattcatag 19527  T

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Target: scaffold0103 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 123
Target Start/End: Complemental strand, 51827 - 51794
Alignment:
Q  90 aaattattagctgagtcggcgtgtcagtgtccgt 123  Q
    ||||||||||||| ||||||||||||||||||||    
T  51827 aaattattagctgtgtcggcgtgtcagtgtccgt 51794  T

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