View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20299_high_2 (Length: 469)
Name: NF20299_high_2
Description: NF20299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20299_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 84 - 453
Target Start/End: Complemental strand, 6281792 - 6281405
Alignment:
| Q |
84 |
catagcgaaattttaattaaattgattgatgtaataagtcaattaatttattgggtacaaaa------------------atattagatactaagatgtg |
165 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6281792 |
catagcgaaattttaattaaattgattgatgtaataagtcaattaatttattgggtacaaaactttattcatataacaatatattagatactaagatgtg |
6281693 |
T |
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| Q |
166 |
tttatcctctaagtacaactcttgataactgcaaagataataatatatagtgacaggtgttcgaacttccgattctccacacttaaagtgtgtgatttga |
265 |
Q |
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||||||||| ||||||||||||| |||||||||| ||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6281692 |
tttatcctccaagtacaactctttataactgcaagaataataatatataatgataggtgttcgaactcccgattctccacacttaaagtgtgtgatttga |
6281593 |
T |
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| Q |
266 |
gttagtaggtcatttgactnnnnnnnnnnnnnnnnnntgtgtctggattatagtaaagggtcaatttttctctcttcctatcaaatgtgattttaataaa |
365 |
Q |
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||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6281592 |
gttagtaggtcatttgactaaaaatataacactaaaatgagtctggattatagtaaagggtcaatttttctctcttcctatcaaatatgattttaataaa |
6281493 |
T |
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| Q |
366 |
aatgtatatacggtaccatacattggaaatggatcttacataatgtctgaattatactatttttctaacactctcacacacacttact |
453 |
Q |
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||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6281492 |
aatgtatatacggtaccatacattgaaaatagatcttacataaagtctgaattatactatttttttaacactctcacacacacttact |
6281405 |
T |
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