View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20299_high_6 (Length: 363)
Name: NF20299_high_6
Description: NF20299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20299_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 6281834 - 6282192
Alignment:
| Q |
1 |
cacatattatattacaatcgttcctaagctatctttctaagaatagtatcatgaaatgttctctagtgaaaaagtatataaaggagaaaaatgtgaatct |
100 |
Q |
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| T |
6281834 |
cacatattatattacaatggttcctaagctttctttctaagaatagtagtatgaaatgttctcttgtgaaaacggatatgaaggagcaaattgtgaatct |
6281933 |
T |
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| Q |
101 |
caatttgcacacattttgaatactccaatgatttgaaaaactatttatgttcccaacagatacagtgagaaataaccatctcaaacatacaaagttcaaa |
200 |
Q |
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| T |
6281934 |
caatttgcacacatgttgaatactccaatgatttgaaaaactatttaagttcc-aacagacacagtgagaaataaccatctcaaacatacaaagttcaaa |
6282032 |
T |
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| Q |
201 |
caacactaactctacatttcatattcattaagtttctaaacactttcatagaaaatggactcacaaaagatgagctacaatgctggacaagccaagggcc |
300 |
Q |
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| T |
6282033 |
caaaactaactctacatttcatattcattaagtttctaaacactttcatagaaaatggactcacaaaagatgagctacaatgctggacaagccaagggcc |
6282132 |
T |
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| Q |
301 |
aaactgaggtctgccttaatgaaatcttactatcgtataatctcttcatttcatctctct |
360 |
Q |
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| T |
6282133 |
aaactgaggtctgccttaatgaaatctcactatcgtataatctcttcatttcatatctct |
6282192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 310
Target Start/End: Complemental strand, 6226447 - 6226410
Alignment:
| Q |
273 |
agctacaatgctggacaagccaagggccaaactgaggt |
310 |
Q |
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| T |
6226447 |
agctacaatgctggacaggccaagggccaaactcaggt |
6226410 |
T |
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